Candidatus Syntrophocurvum alkaliphilum: SYNTR_2177
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Entry
SYNTR_2177 CDS
T06326
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Pathway
salq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYNTR_2177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salq03021
]
SYNTR_2177
03400 DNA repair and recombination proteins [BR:
salq03400
]
SYNTR_2177
Enzymes [BR:
salq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYNTR_2177
Transcription machinery [BR:
salq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYNTR_2177
DNA repair and recombination proteins [BR:
salq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYNTR_2177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
SpoIISA_toxin
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QGU00771
UniProt:
A0A6I6DP08
LinkDB
All DBs
Position
2238848..2242375
Genome browser
AA seq
1175 aa
AA seq
DB search
MLDINNFERIKISLASPEQIRSWSSGEVKKPETINYRTLRPEKEGLFCEKIFGPVKDWEC
HCGKYKRVRHKGIVCDRCGVEVTTSKVRRERMGHIELAAPVCHIWYLKGIPSRMGLLMDM
SPKVLEKVIYFVNYIVLDPGDTPLLKKQLLSEREYRDHKERYGETFTVGIGAEAIRAILE
DIDLEKLSVDLKQEISSTTGQRKSRAIKRLEVVEAFRLSDNNPKWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVIGPKLDMHQCGLPKE
MALELFKPFVMKKLVDKAIASNIKSAKKMVERGREEVWDILEDVIKEHPVLLNRAPTLHR
LGIQSFEPVLVEGRALQIHPLVCTAYNADFDGDQMAVHVPLSAEAQTEARLLMLSSCNIL
NPKDGKPVVTPTQDMVIGLYYLNYMSDEEANKKNPKSYSSPEETQMAHELGHIKLQEKIK
VKIPASKGGSNDLVETTVGRIIFNDVIPDSLGYFNQMIDKKKLGDIIYESYRFEGNAKTA
QMLDGLKRLGYKYSTKGGITVGVTDFETPETKWTILEEADKIVDDIQFDYQAGLITDEER
HNQVVEIWNNATDEITDELKKYLSKENPVYMMATSGARGNFQQIRQLAGMRGLMADPSGK
IIDLPIKANFREGLTVLDYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREED
CESVEGIWVEKITEGSQLIEPLHQRLVGRVSIDTILHPETGEVIVSENEMIDDYTANLIE
KLGIEKSKIRSVLTCKTKHGVCKKCYGRNLATGYNVEIGEAVGIIAAQSIGEPGTQLTMR
TFHTGGVAGDDITRGLPRVEELFEVRKPKGQAIVAEVSGVVRFGENKGRREVEVLDDNGE
ILGAFPVPYGSRLKVQEGDYVEMGDALTEGPLNPHDILKTKGLQDVQRYLLQEVQKVYRS
QGVDISDKHIEIMIRQMLKKVKVEDAGETSVLPGAFIDISTFEEENLETISQNKLPAVCS
PMLLGITKASLNTDSFLSAASFQETTKVLTEAAIKGKVDDLIGLKENVIIGKLIPAGTGY
SRYKKVDIIDEEESDSSLEEVVENSEIIELVGSTE
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatattaataattttgagcgcataaaaatatccttagcttctccagaacaaatt
cgctcatggagtagtggtgaggtaaaaaagcctgagacgataaattatcgtacactaaga
cccgaaaaagaaggcttgttttgtgaaaagatttttggtccagttaaagattgggaatgt
cactgtggaaaatacaaaagggtgcgccataaaggcatagtttgtgatcgttgtggtgta
gaagtaactacttctaaagtaagaagagaacgtatgggtcacattgaattagctgcacca
gtatgtcacatatggtacctaaaaggtattccaagccgcatgggattacttatggacatg
tctcccaaggtgctagaaaaagtaatttattttgttaattacattgtacttgatcctgga
gatacacctttacttaagaagcaacttcttagtgaaagggagtatagggatcataaggag
cgctatggtgaaacctttacggttggcataggagctgaagcaattagagcaattttagaa
gacatagatttagaaaagctatcagttgatttaaagcaagaaatatcatcaacaaccggg
cagagaaaaagcagagctataaaaaggctcgaagtagttgaagcctttagattatctgat
aataaccctaagtggatgattatggatgtactacccgtaattccaccggaattaaggccc
atggttcagttagatggtggtaggtttgctacatctgacttaaacgatttatatcgcagg
gttataaatagaaacaatcgactaaaaagattattagatttaggtgctccagatataatt
gttagaaatgaaaaaagaatgctacaggaagcagtagatgctttagtggataatggtaga
agaggtagacctgttactggtcctggcaatcgtccacttaaatcattaagtgatatgcta
aaaggtaaacaggggcgtttccgtcaaaaccttttagggaaacgtgttgattactcagga
agatcagttatagtaattggtccaaagctagacatgcatcaatgtgggcttcccaaggag
atggcactagagttatttaagccatttgtaatgaaaaaacttgtagataaagcaatagca
tctaatattaaaagtgctaaaaagatggttgaaagaggacgagaggaagtatgggacatt
ctagaggatgttattaaagaacaccctgtactattaaaccgtgctccaacactacaccgt
ttgggaatacaaagttttgaaccagtattggttgaggggcgtgctttacagatacatcca
ttagtatgtacagcatacaatgctgactttgatggtgaccaaatggctgttcatgtacct
ttatcagctgaagcacaaacagaggcaagattacttatgctttcaagctgtaacattcta
aatcctaaagacggaaagccagtagttactcctactcaagatatggttatagggttatac
tatttgaactatatgagtgatgaagaagcaaacaaaaaaaatcctaagtcctatagtagc
ccagaagaaactcaaatggctcatgaattagggcatattaagctacaagaaaaaataaag
gttaagatacctgctagcaagggtgggtcaaatgatcttgtagagacaacagttgggaga
ataatatttaacgatgttataccagatagcttaggatatttcaatcaaatgatagacaag
aaaaaactaggtgatattatttatgaatcctatcggtttgaaggtaatgctaaaacagcc
caaatgcttgatggtctcaaaagattagggtataaatactccactaaaggtggcataact
gttggggtaacagattttgaaaccccagaaactaaatggactattttagaagaagcagac
aaaatagttgatgatatacaatttgattatcaagcaggtctgataacagatgaagaacgt
cataatcaagtagttgagatatggaacaatgctacagatgaaataactgatgaactaaaa
aagtatctaagcaaagaaaacccagtatatatgatggctacatcaggtgcgcgtggtaac
ttccaacagataagacaattagcaggtatgcgtggactaatggcggatccatcagggaaa
attatagatcttccaataaaagcaaacttccgtgaaggcttgactgtactagattatttt
atatcaacacatggtgcaagaaaaggtcttgcagatacagccttacgcacagcagactca
ggttacttaactagaagacttgttgatgtatcacaagatgttatagtaagggaagaagat
tgcgaatcagttgaaggaatatgggtagaaaaaataactgaaggctcacaactaatagaa
cctcttcatcaaagattagttggtagagtatctattgatacaatattgcaccctgaaact
ggtgaagtaatagtttcagaaaatgaaatgattgatgattatacagctaatctaatagaa
aaattgggtatagaaaagtctaaaattagaagtgtattaacatgtaaaactaaacatggt
gtatgtaaaaaatgttatggtagaaatctagcgactgggtataacgttgaaataggagaa
gcggttggtataatagcggctcagtcaataggtgagcccggaacacagttgactatgaga
actttccatacaggtggtgtagccggtgatgatataactcgaggcttgccacgcgttgaa
gaattgtttgaagttagaaagcctaaaggtcaagcaatagttgccgaagtatcaggtgtt
gttaggtttggtgaaaacaaaggtaggcgcgaagtagaagtattagatgataatggtgag
attttaggagcatttcctgtgccatatggttctagattaaaagtccaagagggtgactat
gtagaaatgggagatgccttaactgaaggcccattaaatccacatgatattttaaaaact
aaaggattgcaggatgtgcaaagatacttattacaagaagttcaaaaagtgtatcgttcc
caaggtgttgatattagtgacaaacatatagaaataatgataaggcaaatgctaaagaaa
gttaaagttgaggatgcaggtgaaacatcagtattgccaggtgcgtttattgatatttca
acatttgaggaagaaaacttagagacaatttctcagaacaagttgcctgcagtttgtagt
ccaatgctattaggaataacaaaagcatcactaaacacagactcgttcttatcagctgct
tcgttccaagaaacaactaaagttcttacggaggctgctataaaaggcaaagttgatgat
ctgataggtttaaaggaaaacgtaattattggaaaacttattcctgcaggtacaggatac
tcccgatataaaaaggttgatattattgacgaagaggagtcagattctagtttagaagaa
gtagttgaaaattctgaaataatcgaattagtaggctcaacagaataa
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