Salarchaeum sp. JOR-1: FQU85_08320
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Entry
FQU85_08320 CDS
T06128
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
salr
Salarchaeum sp. JOR-1
Pathway
salr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FQU85_08320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salr03019
]
FQU85_08320
Messenger RNA biogenesis [BR:
salr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FQU85_08320
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QDX40903
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Position
complement(1385877..1387223)
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AA seq
448 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDIVIFDMGLNLSQVLIHDNVETEQMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGALSKLAHRYNAPIVASPFTLELVKDEIESEQK
FGVENDLVEMEAGETMPIGERCELEFVHVTHSIIDAINPVLHTPEGAVVYGLDKRLDHDP
VLEDPIDMKRFREIGREDEGVLAYIEDTTNAGRKGRTASESVARRELQDTIHSMEDYDGG
IIATTFSSHVSRVSSLIEFAQEIGREPILLGRSMERYSGTAERMGRVRFPDNLGMFGHRK
SVDRAFKRIMNEGKENFLPIVTGHQGEPRAMLTRMGRGETPYDIENGDKVIFSASVIPEP
TNEGQRYQSEQLLRMQGARIYDEIHVSGHLREEGHYEMLDALQPQHVIPAHQNLEHFGKY
AKLAKGEGYELGRDLHLSANGNIIQLVE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgagatcgcaacaattggcggatacgaagaagtcggacgacagatgactgcc
gtccgcgcaggtgacgacatcgttatcttcgacatgggcctcaacctctcgcaggtcctg
attcacgataacgtcgaaaccgaacagatgcacagcctcgacctcatcgacatgggcgcg
attccggacgaccgcgtcatgagcgacctcgagggagacgtgcaggccattgtgccgacg
cacggccacctcgaccacatcggcgcgctcagcaagctcgcgcaccgctacaacgcgccc
atcgtcgcgtcgccgttcacgctcgaactcgtgaaggacgagatcgagagcgagcagaag
ttcggcgtcgagaacgacctcgtggagatggaagcgggcgagacgatgcccatcggcgag
cgctgcgaactggagttcgtgcacgtcactcactccatcatcgacgcgatcaaccccgtc
ctccacacgcccgagggcgcagtggtctacggcctcgacaaacgcctcgaccacgacccc
gtgctcgaggatcccatcgacatgaagcggttccgcgagatcgggcgcgaggacgagggc
gtgctcgcgtacatcgaggacacgacgaacgccggccggaagggtcgaaccgcgagcgag
tccgtcgcccgccgcgaactccaggacaccatccacagcatggaggactacgacggcggc
atcatcgcgacgacgttctccagtcacgtctcccgtgtgtcgagcctcatcgagttcgca
caggagatcggccgcgaaccgatcctcctcggtcggtcgatggaacgctactcgggcacc
gcggagcgaatgggtcgcgtgcgcttcccggacaacctcgggatgttcggccaccgcaag
agcgtcgaccgcgcgttcaagcgcatcatgaacgagggcaaggagaacttcctccccatc
gtcaccggccaccagggcgagccgcgcgcgatgctcactcggatggggcgcggcgagacg
ccgtacgacatcgagaacggtgataaagtcatcttctccgcgagcgtgattccggagccg
acgaacgagggccagcgctaccagtccgagcagctcctgcggatgcagggcgcgcgcatc
tacgacgaaatccacgtgtccggccacctccgcgaggaaggccactacgagatgctggac
gccctccagccccagcacgtcattcccgcccaccagaacctcgaacacttcgggaagtac
gcgaaactcgcgaagggcgaggggtacgagctcggccgcgacctccacctgagcgccaac
ggcaacatcattcagctcgtagaatga
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