Streptomyces albus: SLNWT_1983
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Entry
SLNWT_1983 CDS
T03823
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sals
Streptomyces albus
Pathway
sals03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SLNWT_1983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sals03400
]
SLNWT_1983
Enzymes [BR:
sals01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SLNWT_1983
DNA repair and recombination proteins [BR:
sals03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SLNWT_1983
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AJE82359
UniProt:
A0A0B5ELH2
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Position
2501582..2502445
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AA seq
287 aa
AA seq
DB search
MEGRRLALSNLDKVIYPARHFTKGEVVHYYASVAGSLLAHLYNRPVSFLRFPDGPEGQRF
FAKNVPPGTPSWIRTAEVPHSDGPARQVLVQDLATLVWSANLVTEFHTPQWQADAHGIAD
RLVLDLDPGAPASVVECCEVALWLRERLAADGIEAFAKTSGAKGLHLLAPIEPTPSGEVT
GYAKGLAVEAEQALPGLVTHRMTKSLRPGRVFVDFSQNAAAKTTATPYTLRARPEPSVSA
PVTWEEVADCRDAARLHFLADDIPPRLQTHGDLLAPLFNPNRARPLP
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtggaggggcgacggctggcgctcagcaacctcgacaaggtcatctatccggcgcgccac
ttcaccaagggcgaggtggtccactactacgcgagcgtggccggctcgctgctcgcgcac
ctgtacaaccggccggtgtccttcctgcggttcccggacgggcccgaggggcagcggttc
ttcgcgaagaacgtgccgccgggtacgccctcctggatcaggaccgccgaggtgccgcac
tccgacggacccgcgcggcaggtcctcgtacaggatctggcgaccctggtctggtcggcc
aatctggtgacggagttccatacgccccagtggcaggcggacgcccacgggatcgccgac
cggctggtcctcgatctcgaccccggggcgcccgcgagcgtcgtggagtgctgcgaggtg
gcgctctggctgcgcgagcggcttgccgccgacggcatcgaggccttcgcgaagacctcc
ggggccaagggcctgcacctgctcgcgccgatcgagccgaccccctcgggcgaggtcacc
ggctacgccaaggggctcgcggtggaggcggagcaggcgctgcccgggctcgtcacgcac
cggatgaccaagagcctgcggccgggccgggtgttcgtggacttcagccagaacgcggcg
gccaagaccaccgccaccccgtacaccctgcgggcgcggcccgagccctccgtctcggcg
ccggtcacctgggaggaggtcgccgactgccgggacgccgcccggctgcacttcctggcc
gacgacattcccccgcgactccagacccacggcgacctgctggccccgctgttcaacccg
aaccgcgcccggccgctgccctga
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