Salegentibacter sp. T436: AO058_13200
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Entry
AO058_13200 CDS
T04614
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
salt
Salegentibacter sp. T436
Pathway
salt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO058_13200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salt03019
]
AO058_13200
03400 DNA repair and recombination proteins [BR:
salt03400
]
AO058_13200
Enzymes [BR:
salt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AO058_13200
Messenger RNA biogenesis [BR:
salt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AO058_13200
DNA repair and recombination proteins [BR:
salt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AO058_13200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
TrmB
HTH_Cmi2_C
UDPGT
Motif
Other DBs
NCBI-ProteinID:
APS39777
LinkDB
All DBs
Position
3023944..3025845
Genome browser
AA seq
633 aa
AA seq
DB search
MQDAHYILKKYWGHSSFRPLQEPVIEKLLEKKNVLALMPTGGGKSLCFQVPALIKDGICI
VISPLVALMEDQVNALQQKGIKAMALTGGMAYRDLDAALDNCIYGNYKFLYLSPERLQQD
LVQERIKLMNVNLIAVDEAHCISQWGHDFRPAYRNISLLKDLKPETPFIALTATATPAVV
KDIVKELELVDIEVLKDSFYRSNIAYNVLMAEDKYYRLFQLLNNKNEAAIIYVRSRKASL
EIADLLIKKGYKADAFHGGLQPKEKTKKLTSWLENKHHIMVATTAFGMGIDKPDVRQVIH
LNLPESLESYFQEAGRAGRDGAKADATILTNKSDIPVLKNQFLANLPQLEDVKLVYKKLN
TYFRIAYGEGEETEHNFSFSKFCAQYELPFSKTYEVLQLLDRCSVLKLSKEFHKRTSIHF
IISGKQLQYYLEQNQKYENFVKALLRTYGGILENKTAIDLASICKKSNIEQDKALKFLQE
LEKDQVLEYVFAEHDATVLFLVPREDDLVIFPLATYIKQHNQSKKEKIDSVLAYLENEKI
CRSKQLLAYFGEKKVENCGICSVCQKQAAPLTRELKNAIYKEIINILKTSNASSRQLTEA
INYPEDQVLEVLRLLIDKELISRKNGNVYQINR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggatgcacattacatattaaaaaaatactggggacactcgtctttcaggccgctg
caggaacctgttatagaaaaactcctggagaaaaaaaatgtactggcgctaatgccaacc
ggaggtgggaagtcactttgcttccaggtacctgcattaattaaagacggaatatgtatt
gtaatatccccgttagttgcattaatggaagatcaggtaaatgcgcttcagcaaaaagga
ataaaagcaatggcattaaccggcggaatggcttaccgcgacctggatgcagcgcttgat
aattgtatttacggaaattataaattcctctatctttctcctgagagactccaacaagac
ctggtacaggaacgcattaagttgatgaatgtaaatctaatcgcggtagatgaagcacat
tgtatttcgcaatggggccacgactttagaccagcatatagaaatatttcactcttaaaa
gatttaaaaccagaaacacctttcattgcacttacagcaacagcaaccccggcggtggtg
aaagacattgtaaaagaattggaactggtagatattgaagttctaaaagattctttttat
cgttcaaatattgcctataatgtcttaatggctgaagataaatattatagattatttcaa
cttctgaataataaaaatgaggctgcgataatatatgttcgaagccgaaaagccagtctg
gaaatagctgatttattgatcaaaaaaggctacaaagctgatgccttccacgggggatta
caacctaaagaaaaaacaaaaaagcttaccagctggctagagaataagcatcatattatg
gtggctaccactgcttttgggatgggaatagataagccagatgttaggcaggtaattcat
ttaaatttaccagaatctttagaaagctatttccaggaagccggacgcgcagggagagat
ggagcaaaagcagatgcaacaattttaactaataagagcgacatcccggttttaaaaaat
cagtttctcgctaatttaccccaactggaagatgtaaaactggtttataaaaagcttaat
acctatttcaggatagcctacggtgaaggggaggaaaccgaacataattttagtttttct
aaattttgtgcccaatacgaacttccattttctaaaacttacgaggtgcttcagctttta
gatagatgcagcgttctaaaactatcaaaggaatttcataaaagaaccagtattcatttt
atcatttctggaaagcaacttcagtattatctagagcaaaatcagaaatacgaaaatttt
gtaaaagcgctattaagaacctacggtggaattctggaaaataaaacagcgatagacctg
gcttcgatttgtaaaaaatctaatatagagcaagacaaagcgctaaaatttcttcaggag
ctggaaaaagaccaggtgctggaatacgtttttgcagaacacgatgcaaccgttttattt
ttggttccacgggaagacgatttggttatttttccgttggcgacatatataaagcaacat
aaccagtctaaaaaagaaaaaatagattcggttttggcttatctggagaatgagaagatt
tgccgaagcaagcaattactcgcatattttggagagaaaaaagtagaaaactgcggaatt
tgttcggtttgccaaaaacaagctgcgcctttaaccagagagcttaaaaatgcgatttat
aaagaaataataaacattttaaaaacctctaacgcttcttcgcggcagctcaccgaggcc
attaattatcccgaagatcaggttttagaagttttacgattattaatagacaaagaatta
atttctcgaaaaaacgggaatgtttaccaaataaatagatga
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