Snodgrassella alvi: SALWKB2_0215
Help
Entry
SALWKB2_0215 CDS
T03063
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
salv
Snodgrassella alvi
Pathway
salv03410
Base excision repair
salv03430
Mismatch repair
salv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SALWKB2_0215
03430 Mismatch repair
SALWKB2_0215
03440 Homologous recombination
SALWKB2_0215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_0215
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SALWKB2_0215
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SALWKB2_0215
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SALWKB2_0215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
LON_substr_bdg
Motif
Other DBs
NCBI-ProteinID:
AHN27597
LinkDB
All DBs
Position
complement(266565..268262)
Genome browser
AA seq
565 aa
AA seq
DB search
MKPAHIITRSVDTDALQTLLAQGVDPLLAKLYATRAIKNKSETEYNLSALLPFQNLKNIQ
AASERLAQAIERQEKILIVADYDADGATACALGMRGLQAMGAQTDFFVPNRFEHGYGLTE
QIAELAAQTGTNLLLTVDNGIASVAGVQRAQQLGMDVLITDHHLPGEQLPECIIVNPNQP
GDQFPSKALAGVGVMFYVLMALRYHLRQQNWFSKHPEPNLAQWLDLVALGTIADVVPLDQ
NNRLLVAQGLRRIKADKMQAGIRALFAVAKRNPQQAHAFDLGFAIGPRLNAAGRLDDMSL
GIACLLSDDMESATDLAKQLNDLNHERRQIQRSMQDEANLQLAGFNTENSYSIVAYHDNW
HQGVTGILAGRLRETFHRPSIVFAQAEDGTLRGSGRSITGLHLRDALDMVSKRRPDIIQK
FGGHAMAAGLSISEIHLAAFQNEFEAVCRQLIRPADLNYTYQTDGSLDNQYLNLATAQQL
AALVWGQNFPEPRFCDEFKVIRQQIVGTGHIKAVLHKNNCEYEVMFFRCTATLPEHIRVV
YRLIANQWHQQMELQLYADYWEICN
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaagccggcacatattattacccgttcggtagatactgatgctctgcaaactctgctt
gctcagggtgttgatcctctgctggccaaactgtatgcaacacgagcaattaaaaacaaa
agtgaaactgaatacaatttatctgcgctgttaccgtttcagaatttgaaaaatattcag
gccgccagtgaacgactggctcaggcaatcgaacggcaggaaaaaattctgattgttgcc
gattatgatgcagacggagccacagcatgtgccttagggatgcgcggattacaggcaatg
ggagcgcaaactgattttttcgtccccaaccgctttgaacatggttatggcttaactgaa
caaattgctgagcttgcagctcagacaggtacgaacctgctgcttaccgtggataatggt
atcgccagtgtagccggcgtacaacgcgcacaacagctaggaatggacgtcctgattact
gaccaccatctgccgggtgaacaactgcctgaatgtattattgttaatcctaatcaacca
ggtgatcaatttcccagtaaagcattggctggtgtgggtgtgatgttctacgtactaatg
gctttgcgttaccatctgcgccagcaaaactggtttagtaaacatccggaacccaatctt
gctcaatggcttgatttggtggcactgggcaccatcgccgatgtagtacctctcgatcag
aataatcgcctgctggtagctcaagggctcagacgaattaaagctgataaaatgcaagca
ggaattcgtgccttgtttgcagtggccaaacgcaatccgcaacaggcacatgcatttgat
ctgggttttgctatcggaccccgtctgaatgctgccggcagactggatgatatgagtctg
ggtatagcctgtctgttgagcgatgatatggaaagtgcaaccgatctggccaaacaactg
aatgatctgaaccatgaacgtcgtcagattcagcgcagcatgcaggatgaagctaatcta
caactggccggcttcaatacagaaaacagctatagcatcgttgcttatcatgataactgg
catcagggagtaaccggaattttagcaggccggttacgcgaaacctttcatcgacccagt
attgtttttgctcaggcggaagatggtacattacgcggctccggccggtctattaccggt
ttacatctgcgtgatgcactggatatggtcagtaagcgccggccggatattatccagaag
tttggcggacatgctatggctgcaggcttaagtatttccgaaatacatctggcagctttc
caaaatgaatttgaggcagtctgccggcaactcatccggccggcggatttaaactatacg
taccagactgatggttcattagacaatcaatatctgaacttagccacagcacagcaattg
gcggctctggtatggggccagaattttcctgaacctcgtttttgcgatgaatttaaagta
atcagacaacaaatagtgggtaccggccatattaaagcagtgttacacaagaacaactgt
gaatatgaagttatgtttttccgctgtacagccaccttaccggaacatattcgcgtggtt
taccggctaattgccaaccagtggcaccagcaaatggaattacagttatatgcagattac
tgggaaatttgtaattaa
DBGET
integrated database retrieval system
