Snodgrassella alvi: SALWKB2_0251
Help
Entry
SALWKB2_0251 CDS
T03063
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
salv
Snodgrassella alvi
Pathway
salv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SALWKB2_0251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salv03021
]
SALWKB2_0251
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_0251
Enzymes [BR:
salv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SALWKB2_0251
Transcription machinery [BR:
salv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SALWKB2_0251
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SALWKB2_0251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHN27633
LinkDB
All DBs
Position
304726..308901
Genome browser
AA seq
1391 aa
AA seq
DB search
MKALSDLFNPLQNASAEEEFDAIKIGIASPDTIRSWSYGEVKKPETINYRTFKPERDGLF
CAKIFGPIKDYECLCGKYKRLKFRGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFL
KSLPSRLGMVLDMTLRDIERILYFEAYVVTDPGLTSLQPRQLLSEEEYITKYEESGGDFE
AKMGAEGIRDLLRAMDIAHEVTVLRQELDSTSSDTKIKKIAKRLKVLEAFQRSGMKLEWM
IMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKR
MLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITV
GPYLRLHQCGLPKKMALELFKPFIFHKLEQLDPTVTTIKKAKKMVEQEEPIVWDILEDVI
REHPILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINGKGEGSLFADVKEVHRA
YQTRQVELGTKITVRLREWVKNGQDEFVPVVNRYETTVGRALLSEILPKGLSFDHINKTL
KKKEISKLINASFRRCGLRDTVIFADHLMYTGYAFSTRAGISICVDDMLVPESKPQLLAE
ANAEVKEIEDQYRQGLVTNGERYNKVVDIWGRTGDKIAKAMMDNLSTQKVVDREGNLVDQ
ESFNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIST
HGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTNDGFVMKAVVQGGDIIESLR
DRVLGRVTAEDVVDPTSGETLVEAGTLLNESLVDLIDNSGVDEVKVRTPITCKTRHGLCA
KCYGRDLARGKLVNAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSGG
TVRFSSQMRYVANNKGELVVIGRSSEIVIHDDIGRERERHKVPYGALLQVKDGGVVKAGQ
TLATWDPHTRPMITEFAGRVRFENIEEGVTVAKQTDDVTGLSTLVVIDGKRRSSTQSKLL
RPTVKLLDDKGEEIRMAGSETAVSMAFPVGAVITVREGQEVGKGDVLARIPQASSKTRDI
TGGLPRVAELFEARTPKDVGMLAEVTGTVSFGKETKGKQRLIITDADGAAYETLISKEKQ
VLVHDGQVVNRGEVIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEV
IIRQMLRRVNIADAGDSHFITGEQVERGDVMIANEKLLAEGKEPVRFDNVLLGITKASLS
TDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLTYHRSRRQKWQE
QLAAEAAEKSE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttatcagacttatttaatccgctgcaaaatgccagtgccgaagaagaattt
gacgcaattaaaatcggcattgcttcgccggataccattcgttcttggtcgtacggtgaa
gtaaaaaaaccggaaacgattaattaccgtacttttaaaccggaacgtgacggtttgttt
tgtgccaagatttttggcccgattaaagattatgaatgtttgtgtggtaaatacaaacgc
ctgaaatttcgcggagtaacctgtgaaaaatgtggtgtggaagtaactttgtccaaagta
cgccgcgagcgcatgggacatatcgaactggctgcaccggttgcgcatatctggtttttg
aaatctttaccatcccgtctgggtatggtattagatatgactttgcgtgacattgaacgt
attctgtattttgaagcttatgtggtaactgatccggggctgacttcattgcagccgcgt
cagctgcttagtgaagaagaatacattaccaaatatgaagagtctggcggcgattttgaa
gccaaaatgggggctgaaggcattcgagatttactgcgagccatggatattgcccatgag
gttactgtattgcgtcaggaactggattcaaccagttcagatacaaaaattaagaaaatt
gctaaacgactgaaagttctggaagcattccagcgttccggtatgaaactggaatggatg
attatggatgtgttgccagtactgccaccggatttgcgtccgctggtaccgctggatggc
ggccgttttgctacttctgatttgaatgacctgtatcgtcgcgtcattaatcgtaacaac
cgtttgaaacgcctgcttgaactacgtgcgccggatatcatcgtacgcaatgaaaaacgt
atgttacaggaagcggtagactcattactggataatggtcgtcgtggtaaagccatgact
ggtgctaataaacgtccgctgaaatcactggcagatatgattaaaggtaagggcggtcgt
ttccgtcagaatctgctgggtaaacgtgtcgattattctggtcgttctgtgattacagtt
ggtccgtacctgcgtctgcatcagtgcggtttgccgaagaaaatggctttggaactgttc
aaaccatttattttccataaacttgaacagttagatccaaccgtaactaccatcaaaaaa
gccaaaaaaatggtggaacaggaagagccgattgtatgggatattcttgaagatgttatt
cgtgaacatccgattctgctcaaccgtgcaccaaccttgcaccgtttgggtattcaggca
tttgagccgattctgattgaaggtaaggcaattcagctgcatccgctggtatgtactgca
tttaacgccgactttgacggtgaccagatggctgtgcacgtaccactgagtctggaagca
cagatggaagcacgtaccttgatgctggcttcgaataatgtattgtcaccagccaatggt
gaaccaattatcgtaccgtcacaggatatcgtattgggtctgtattatatgacccgcgat
aaaattaatggtaagggcgaaggcagcctgtttgctgatgtaaaagaagtacaccgtgcc
taccagactcgtcaggtagagctgggtactaaaattactgtacgtttgcgtgaatgggtg
aaaaatggtcaggacgaatttgtaccggtagttaaccgttatgaaactactgtcggccgt
gctctgctgtcagagattctgccaaaaggtttgtctttcgatcatattaataaaacgctg
aagaaaaaagaaatttctaagctgattaatgcttcattccgtcgctgcggattgcgtgat
actgtcatttttgctgaccacctgatgtataccggttatgcattctcaactcgtgccggt
atttcaatctgcgttgacgatatgctggtgcctgaaagtaaaccacaattgctggcagaa
gctaatgcagaagttaaagaaattgaagaccagtaccgtcagggtctggtaaccaatggc
gaacgttacaataaagtagtcgatatctggggtcgtaccggtgacaagattgccaaagcg
atgatggataatctgtctactcagaaagtagttgaccgcgaaggtaatctggttgatcag
gagtcatttaactcaatttacatgatggctgactccggtgcccgcggttctgccgctcag
attaagcagttgtcaggtatgcgtggtttgatggcgaaaccggatggttccattattgaa
acaccgattacttctaacttccgcgaaggtctgacagtattacagtactttatttctact
cacggtgcccgtaaaggtctggctgatacggcattgaaaactgctaactccggttatctg
acccgtcgtcttgttgatgtgacacaagacttggtggtagtagaagatgattgtggtacc
aacgacggctttgtgatgaaagcagtggtacagggcggtgatatcattgaatcattacgt
gatcgcgtactgggacgtgttactgctgaagatgttgttgacccgaccagtggtgaaact
ttagttgaagcaggtacgctgctgaacgaaagtctggttgatctgattgataattcaggt
gtcgatgaagttaaagtacgtactccgattacctgtaaaacacgtcatggattgtgtgcc
aaatgttatggccgagatctggcgcgcggtaaactggtcaatgccggtgaatctgttggt
gtgattgctgctcaatctattggtgagccgggtactcagctgactatgcgtaccttccac
attggtggtgccgcttcacgagctgcagccgcaagtcaggtagaggctaaatctggtggt
acggttcgcttctccagccagatgcgttatgtagccaataacaaaggtgaactggtcgtt
attggtcgttcatccgaaattgtgattcatgacgatattggtcgtgagcgtgaacgccat
aaagtaccttacggtgcattgttgcaggtaaaagatggtggtgtggtgaaagccggtcag
acactggctacgtgggatccgcatacccgtccgatgattaccgagtttgccggtcgtgtc
cgctttgaaaacatcgaagaaggcgttactgtagccaaacagaccgatgatgttaccggt
ttgtctacactggtagttattgatggtaaacgtcgttcctctactcagtctaaactgttg
cgtccgacagtaaaactgctggatgacaaaggcgaagaaattcgcatggcaggaagtgaa
accgctgtttccatggccttcccggttggtgcggtgattactgtacgagaaggacaggaa
gtaggtaaaggtgatgtactggcccgtattcctcaggcttcatccaaaacccgcgatatt
accggtggtctgccgcgtgtagctgaattgttcgaagcacgtactccgaaagatgtgggt
atgctggctgaagtaactggtactgtttctttcggtaaggaaaccaagggtaaacagcgt
ctgattattactgatgcagacggtgctgcttatgaaaccctgatttccaaagaaaaacag
gtgctggtacatgatggtcaggtggtgaatcgcggtgaagtaattgtagatggtgcagtc
gatccgcatgatattctgcgtttgcagggtattgaggcgctagctcgttatatcgtgcag
gaagtacaggaagtgtatcgtctacaaggtgtgaagatttccgataaacatatcgaagtg
atcattcgccagatgctgcgccgggtaaatattgccgatgccggtgacagtcacttcatt
actggtgagcaggttgaacgcggtgatgtaatgattgccaacgagaagttgctggcggaa
ggtaaagaaccggtacgctttgacaatgtattgctgggtattactaaagcatcattgtct
accgattcgtttatttctgctgcatccttccaggaaactacccgtgtgctgactgaagcg
gctattatgggtaaacgtgacgatttgcgcggcctgaaagaaaacgtaattgttggtcgt
ctgattccggccggtaccggactgacttaccatcgcagtcgccgccagaaatggcaggag
cagttggctgctgaggctgcagagaaaagcgaataa
DBGET
integrated database retrieval system
