Snodgrassella alvi: SALWKB2_0349
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Entry
SALWKB2_0349 CDS
T03063
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
salv
Snodgrassella alvi
Pathway
salv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SALWKB2_0349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_0349
Enzymes [BR:
salv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SALWKB2_0349
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SALWKB2_0349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
DUF5619
Motif
Other DBs
NCBI-ProteinID:
AHN27731
LinkDB
All DBs
Position
complement(423461..426685)
Genome browser
AA seq
1074 aa
AA seq
DB search
MLYVYQSNQLSDLAALFASIYQHTSPQSAWAATEIVVQSQGMRRYLNHYLAQEHGIAANL
HFSLPASYIWQLTHQVLPQTPALNPFQSEVLRWRLLGLFHSPAFRQPQLCQTATALHSYL
DSSTQAPYHLAGKLADMFDQYLIYRNDWINNWQENKSANLGEDEQWQAELWRWLNNESDL
PHRAGLMQEFLSKLDSEHLPERIFVFGIATLAPVYLHALQVIAQYTDVHIFAVNPCAEYW
GNVLSADMLLNSQETDLSVVGHPLLASLGKQGRDFFDALNDLGEVVYMPSVYAQCDEVAD
TLLHRLQNDIQCLQHPKQSEPPYRLQEYDNSIQIVAAHSCLRELQILKEQLIQDLAAHPQ
WQPQDIAVLTPHIGPYLPFIHAVFGQTQGDTPALPYNIADVKISLHEPLLQLFEKLLQLM
QSRFDIETVLPLLDESALRTRFALNDSDAELIHRVWSEQGVRWGVDADMRHEYGGQGKHF
TWQQARERTVLGWLLPENKYTALWQQQLPWFGDIGQTEILACAQQLIDCLIKHHSCWQKA
ATISEWIARTRQLLRDLADTDSLSGHAMQQLETSLAEWQAQAALAQFNLTIEPAIAIEHL
QNYLSTTRQAGFLRGGITFCSMVPMRSLPFRCICLLGLNDGEFPRTTKSAAFDLIAQHPR
RGDRARRNDDRYLFLESILSAREKLYLSYIGKDIRKNEELAPSALLYELTDVLAAMTGCN
PLVFNQQHIIRHPLQPFSYRYFNGDLISCRSDYATALNQNIVKPEPFYAKITEPEKQNQE
VDIESFIRFWRNPVRHWLQQQLQWQAPYQETPVSAAEPFAIENSASIYTAYTRARRQHLD
FAEVDAALAVSGLVPEGELGVIVSQVLRNQTLALDSSILFSPAVADIAFIFEHEQLQLSG
NISRLHQCGQLIERNHTPTAPDNIELYLRHLLLCATESEGAQDTYELYPAKPRMLAAMSL
IDAQAQLALWLEYYRLGQSRPLPFFPKTSLTTALKWYRNRQKKNRAPEYGAEERSTAFKV
YADSHNGKLQADYPEVAQVFGRDEELPIDTPLFWQLIEELLLPMTAVLETADKL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgctgtatgtttatcaatccaatcaactatctgatttagctgctttgtttgccagcata
tatcagcatacctcaccacagtcagcatgggctgcaacagaaatcgtggtacagagtcag
ggtatgcgccgctatctgaatcactatctggctcaggagcacggtattgccgctaatctg
catttcagtctgccggccagctacatctggcaattaactcatcaggtcttaccgcaaaca
ccagcgcttaacccgtttcagtcagaagtattgcgctggcgcttactgggattgtttcat
agcccggcattcagacaaccccagttatgccaaactgctaccgcactacattcttatctt
gatagcagtactcaggcaccttaccatctggccggaaaacttgctgatatgtttgaccaa
tatttaatctatcgcaatgattggataaataattggcaggaaaataaatctgcgaatctg
ggtgaagatgagcaatggcaggcagagctatggcgctggctgaacaatgaatcagattta
ccacaccgcgccggcttaatgcaggaatttctgagcaaacttgattctgaacatttacct
gagcggatattcgtattcggtattgccacactggcaccggtttatctgcatgcattacag
gtaatagcccaatatactgatgtgcatatatttgcggtaaacccgtgtgctgagtactgg
ggcaatgtgctctcagcagatatgctgctcaatagtcaggaaacagacctgagtgtggtt
ggtcatcctttactggccagtctgggcaaacaggggcgggatttttttgatgcactcaat
gatctgggtgaagtagtgtatatgccttctgtctatgctcagtgtgatgaagtggcagat
actctgttacaccggctgcaaaacgacattcagtgcctgcaacatccgaaacagtctgaa
ccaccctaccggctgcaggaatatgataattccattcagattgtggcggcgcattcctgc
ctgcgcgagctgcaaattctcaaagagcagctgattcaggatctggccgcacatccgcaa
tggcagccgcaggatattgcggtacttacaccacatattgggccttatctgccttttatc
cacgcagtattcggacaaacgcagggcgacacgcctgctctgccctacaatattgctgac
gttaaaatcagcctgcatgaaccactactgcaattattcgaaaaactgctgcaactgatg
cagagccggtttgatatagaaactgtgctgcctttgctggatgaatctgctctgcgcaca
cgttttgctttgaacgacagcgatgcagaactgattcaccgtgtctggagtgaacaaggg
gtacgctggggtgtggatgcagatatgcgtcatgaatatggcggacagggtaagcacttt
acctggcagcaggcgcgtgaacgtacggtactcggctggttgctgccggaaaataaatat
acggcactgtggcagcaacagcttccatggttcggtgatattggtcagactgaaattctg
gcatgcgcacaacagttaatagactgtctgattaaacatcatagctgctggcaaaaagca
gctactatttccgaatggattgcgcgtacacgacaacttctgcgggatttagctgatacc
gattctctgtccggacatgccatgcagcaactggaaaccagtctggctgaatggcaggca
caggcagcactggcacaatttaatctgactattgaaccggctattgcaatcgagcatttg
cagaattatttatccactacccgtcaggccggatttctgcgcggcgggattaccttttgc
agtatggtaccgatgcgcagcctgccctttcgctgtatctgtctgctcggtctgaatgac
ggcgaatttccccgtactactaaatctgctgctttcgacctgattgcacagcatccgcgc
cgcggcgatcgtgcccgtcgtaacgatgaccgttatctgtttcttgaatctattttaagt
gcgcgcgaaaaactgtatttgtcgtatatcggtaaagatattcgcaaaaacgaagaactg
gctccctctgctctgctttatgagctgaccgatgttctggccgccatgaccggctgtaat
ccgctggtatttaatcagcagcatatcatcagacacccgttacaacccttttcctatcgc
tattttaacggtgatttaatcagctgccgcagtgattacgccacagccctgaatcagaat
atagttaagcctgagccattttatgcaaaaataactgaaccggaaaaacagaatcaggaa
gttgatattgaatcctttatccggttctggcgtaatccggtacgtcactggcttcagcag
cagttacaatggcaggcaccctatcaggaaacaccagtcagtgcagcagaaccgtttgca
attgaaaacagtgcatcgatttatactgcctatacccgtgcacgccggcagcatctggat
tttgctgaggtagatgcagcactggcagtaagcggactggtgcctgaaggcgagctgggt
gtgattgtcagccaggttttacgcaatcagacactggctctggacagcagcatactgttc
agtcccgctgtcgccgatattgcctttatttttgaacacgaacagttacagctaagtggc
aacatcagccgtttacatcagtgcgggcaactgattgaacggaatcacaccccgacagca
ccggataatattgagttatatctgcgccatttactcctctgcgctactgaaagcgaaggt
gcacaggacacatatgagctttatccggccaaaccgcgcatgctggcagcaatgagcctg
attgatgcacaagcgcaactggctttatggcttgagtattaccggctgggacaaagccgg
ccactgcccttttttccgaaaaccagccttaccactgcccttaaatggtatcgtaaccgg
caaaagaaaaaccgtgcacccgaatatggtgccgaagaacgcagcaccgcgtttaaagtc
tatgcagacagccataatggaaaactgcaggccgactatcccgaagtagctcaggtattt
ggccgcgatgaagaactgccgattgacaccccactgttctggcaactgattgaagaatta
ctgctgcccatgacagcagtgctggaaaccgctgataaattataa
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