Snodgrassella alvi: SALWKB2_0682
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Entry
SALWKB2_0682 CDS
T03063
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
salv
Snodgrassella alvi
Pathway
salv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALWKB2_0682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salv03019
]
SALWKB2_0682
03016 Transfer RNA biogenesis [BR:
salv03016
]
SALWKB2_0682
Enzymes [BR:
salv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SALWKB2_0682
Messenger RNA biogenesis [BR:
salv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SALWKB2_0682
Transfer RNA biogenesis [BR:
salv03016
]
Prokaryotic type
tRNA degradation factors
SALWKB2_0682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
Methyltransf_FA
KH_KhpA-B
KH-I_KHDC4-BBP
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AHN28064
LinkDB
All DBs
Position
741943..744066
Genome browser
AA seq
707 aa
AA seq
DB search
MFNKHIKTFQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLT
VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSV
DPEIDSDIPAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLVVA
GTEKAVLMVESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVADE
SLIAKVRELAGATIDEAFKIKQKQARTAKLDEAWSAVEAALITEETDTLLANQIRGIFKD
LEKEVVRGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQ
RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVE
DFSYTMRVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFAVLT
DILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQE
AVKGPQELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITIAAS
TSEAGEAAKRRIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQISHDR
VKNVSDYLQIGQQVKVKALEIDDRGRVRLSIKALLEKAPQEQKPAEN
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaacacattaaaacctttcaatacggcaatcagacagttactttggaaact
ggtgaaattgcccgtcaggcagccggtgcagtaaaaatttccatgggcgatactgtggta
ctggtagccgttacagctgctaaagaagtcaaacctggtcaggatttctttccgctgacc
gtagactatctggaacgcacctatgcagccggtaaaattccgggcggattttttaagcgg
gaaggcaaacagagtgaaaaagaaatccttaccagccgcctgattgaccgtccgattcgt
cctttatttccggaaggtttctacaacgatattcagatagttgctatggtagtatcagtt
gatccggaaattgattcagatattccggctatgctaggtgcttcagctgcactactacta
acaggtgttccttttgccggtccgattggtgcagcccgtgtcggctatgtcaatggtgaa
tatgttcttaatccgactaaaactcagctggctcagtcacaactggatttagttgttgct
ggtacagaaaaagccgtattgatggtggaatctgaagcagatgtactgtctgaagaaacc
atgctgggtgcagtagtattcggtcatgaacaaatgcaggcagccatccgtgccatcaat
gaatttgctgatgaagttaatccggaaatgtgggactggcaggctcctgttgctgatgaa
agcctgattgccaaagtgcgcgagctggctggtgcaacaattgatgaagcattcaaaatc
aagcaaaaacaagcccgtacagcaaaactagatgaagcatggtctgctgttgaagcggct
ttgattaccgaagaaactgatacattactggctaaccagattcgcggtattttcaaagat
ctggaaaaagaagtagttcgtggtcagattctggaaggtcagccgcgtattgacggccgt
gatacccgcactgttcgacctattaatatccggaccggcgtattaccgcgtacacatggt
tctgccttgtttacccgtggtgaaactcagtcactggctacagcaacactgggcactcag
cgtgatgaacagattattgatgctctgagtggtgaatataccgaccgctttatgctgcat
tacaatttcccaccatactcaaccggtgaagtaggccgtatgggtgcaccaaaacgccgt
gaaatcgggcacggccgtctggcaaaacgcgcactgctggctgtattgcctgatgttgaa
gatttcagctacaccatgcgtgtagtatctgaaattactgaatccaatggttcttcttcc
atggccagcgtatgtgccggatgtctgagtctgctgaatgctggtgttcctctgaaaagt
catgttgccggtatagccatgggtttaattctggatggcaataaatttgctgtactgact
gatattctgggcgatgaagaccaccttggtgatatggactttaaagttgccggcaccact
acaggtgtgactgctctgcaaatggatatcaaaattcagggaattaccaaggaaatcatg
cagattgcactggctcaggcgaaagaagctcgtttgaatattctcggacaaatgcaggaa
gcagtaaaaggtccgcaagaattatctgcacatgcaccacgtttatttaccatgaaaatt
catcaggacaagattcgtgatgttattggtaaaggtggtgaaactatccgtgcattaacc
gcagaaaccggtactgaaattaatattgccgaagatggtacgattaccattgctgccagc
accagtgaagcaggagaagcggccaaacgccgtattgaggaaattactgctgaagtagaa
gtgggtaaagtatacgaaggcacagtaatcaagattctggataacaatgttggtgctatc
gtatcagttatgccgggtaaagacggcttggtacacatcagccagatttcacatgatcgt
gtgaaaaatgtaagcgattacctgcaaattggtcagcaggttaaagtaaaagcactggaa
attgatgatcgcggccgtgtacgcctgtcaatcaaagctttgcttgaaaaggcaccgcaa
gaacaaaaaccggctgaaaattaa
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