Snodgrassella alvi: SALWKB2_0873
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Entry
SALWKB2_0873 CDS
T03063
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
salv
Snodgrassella alvi
Pathway
salv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SALWKB2_0873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_0873
Enzymes [BR:
salv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SALWKB2_0873
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SALWKB2_0873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
UvrD-helicase
Helicase_RecD
SH3_13
UvrD_C
AAA_16
DEAD
nSTAND3
T2SSE
SLFN-g3_helicase
NTPase_1
NPHP3_N
NACHT
L-fibroin
AAA_28
Mg_chelatase
DUF4147
SRP54
CbiA
Motif
Other DBs
NCBI-ProteinID:
AHN28255
LinkDB
All DBs
Position
954838..956619
Genome browser
AA seq
593 aa
AA seq
DB search
MAEAINPAETQEQSAHPALAAIEHVLRGVAQNEWEIIQPWADKLLWALNRGDSYIIVPRQ
YSETLRKCRILVGAAGTYTPFILQSNHLFLGRMWQLEQDIAESMLALASIPPVHLNMDVA
TDLADWFPDADSTQQRFAAALALIQHFVVINGGPGTGKTTTVAKILSLLLKHTWHLSRPP
QIALVAPTGKAAAHMASALQRALDKLPLSDDSRQLLADLSGQTVHRLLQLQPPLLTGPYD
AEHPLPVDILVVDESSMLDLSLFRALLRALKPDIRIILLGDANQLPAVGAGNVLAELSQP
TVLSPELKKQLTALLPEQSLPPVSDNAGMAQYVATLTHSYRFDATQGIGALASACINGDA
TAALNAVNSFPEQLQLHQFDIQVLCRKLYSQQQLWWQAVAANNITQVFSHLTDIMVLTAW
RTDAEAFNQQYRSYLRTQLHQNTDSWFAGMPILITQNDYGVGLFNGDIGVILPEQNNSGH
LLAYFAEGTNYRSISLSRLPQHESAFAITVHKSQGSEYDDVWLLAPQLRAAADDSLFNRS
LLYTALTRARKQFTFCGTAKQLVQGIKNNQQRHSGLGAALAQLLRKQTQLSLF
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagctatcaatccggcagaaactcaggaacagtctgcacatccggcacttgct
gcaattgagcatgtgcttcgtggggttgcccagaatgagtgggaaattattcagccatgg
gcagataagctgttatgggcgctgaatcgtggcgacagttatattattgttccccgacaa
tattcggagacgcttcgtaaatgcagaattcttgttggagctgctggtacttatacgcca
tttattttgcaaagcaatcatttatttttaggaagaatgtggcagcttgagcaggatata
gccgagtctatgctggcattggccagtattccgcctgttcatttgaatatggatgtagcc
actgatctggcggactggtttcctgatgccgacagtacccaacaacgttttgctgcggca
ctggctcttattcagcattttgtagtgattaatggcgggcccggaactggtaaaacgact
actgtagccaaaatactgagtttattgctgaaacatacctggcatttatcgcgtccgccg
caaattgcactggtagcaccaactggtaaagctgcggcacatatggccagtgctttacaa
cgtgcattggataaactgccattatctgatgacagtagacaattgctggcagatttatca
ggtcagacagttcaccgcctattacagttacaacctccattgttaacagggccatatgat
gcagaacatcctttaccggttgatatcctagtggtggatgaatcctcgatgctggatttg
tctctgtttcgtgcactgttgcgtgctttaaagcctgatattcgtattattttgctggga
gatgctaatcagctgcctgctgtaggtgcaggaaatgtgctggctgaattatcccagccg
acagtactgtctcctgagctgaaaaaacagcttacggctttattgcccgaacagtctttg
cctcctgtcagcgataatgccggtatggctcaatatgttgctacgttaactcacagttac
cggtttgatgcgacacagggtattggcgctctggcctccgcttgtattaatggtgacgcg
acggctgcacttaatgcagtaaacagttttccggagcagttacaactgcaccaatttgat
atacaagtactgtgtcgcaaattatattcacagcaacagctatggtggcaggcagtggcc
gcaaataatattactcaagtattcagccatcttaccgatattatggtgctgactgcatgg
cgtactgatgctgaagcatttaatcagcaataccgcagctatttacggactcagttacat
cagaatacagatagctggtttgctggtatgccgattctgattactcagaatgattatggt
gtgggtctgtttaatggtgatatcggcgtgattcttcctgaacagaataatagcgggcat
ttactcgcttattttgctgaagggacaaattatcgctcaatttctctcagccgcttacca
cagcatgagtcagcctttgccataacggtacataaaagtcagggatcagaatatgatgat
gtctggttgctggccccgcagttgcgcgcagcggctgatgattcgttgtttaaccgttct
cttttgtataccgcattaaccagagccagaaaacagtttactttttgcggtacggccaaa
cagctagtacaaggtataaaaaataaccagcagcggcatagcggattaggtgcagctctg
gctcaattattgaggaaacagacacaattgtctttattctga
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