Snodgrassella alvi: SALWKB2_0995
Help
Entry
SALWKB2_0995 CDS
T03063
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salv
Snodgrassella alvi
Pathway
salv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SALWKB2_0995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_0995
Enzymes [BR:
salv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SALWKB2_0995
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SALWKB2_0995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
UB2H
ERCC3_RAD25_C
SecA_DEAD
HemY_N
Motif
Other DBs
NCBI-ProteinID:
AHN28377
LinkDB
All DBs
Position
complement(1093811..1097221)
Genome browser
AA seq
1136 aa
AA seq
DB search
MPAAASFALPKTRQTVIWSDLNAGSLPLLLSQHLPEKKLKIILTADAEQAIRIQAAWHFF
DPAARIMFFPDWETLPYEHFSPHQELVSERLSTLWQLKNGLVDVLLLPLATAMQKIAPPS
FLLGHTFWLKTGQELNIEALKHSLVEAGYNHVSHVVATGEFAMRGGILDIFPMGSDTPFR
LDLFDNEIDTIKTFDADSQRTLTTVDEIRLLPAHEFPTDSDAQKIFRSRFREEINSDARK
ATVYNAVSEGHFGAGVEYYLPLFFEEECVSIFDYTDDEAILVCLGDIHQESARIWQDVKQ
RYILAQGDPAYPPLAPDYLYLSEDQFGARIKSYARLVPQISEDTTYTLPSVAVDRQADDP
LHTLKNFLQQWSGRVLICAESLGRRETMLNFMRQYSLQPDIVNSWQDFLNSNSSLCLTIA
PLSYGCLLTDQQLAIITEADLYQYIIRGRRTRRKHSAVSDGMLRDLAEIKIGDPVVHEQH
GIGRYQGLVTLDLGEGACEMMLLEYAEGSQLYVPVSQLQLISRYAGSAHDNVSLYKLGHG
AWDKARHKAAEKARDTAAELLNLYAQREAQQGHRFSLNEMDYQAFANGFGYEETEDQATA
IAATIKDLCAEKPMDRLICGDVGFGKTEVALRAAFVAAMAGKQVVVLAPTTLLVEQHAQN
FADRFADFPIKVAQLSRFNTSKQTQATLAGLADGTVDIVIGTHKLVQPDVHFKNLGLVII
DEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKT
FVRPYSDGLIREAVLRELKRGGQVFFLHNEVDTIANTYEKLTTLLPEARIGIAHGQLRER
ELEQIMRDFLQQRYNVLLCSTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRSHH
QAYAYLLIPDAMTKDAQKRLEAIEMADDLGAGFTLAMQDLEIRGAGEILGEGQSGEMIQV
GFTLYTEMLKQAVRNLKKGREPDLDAPLGITSDIKLHSPALLPENYCPDIHARLVLYKRL
ASCETEAEIDQIHEELIDRFGLPEPAVSTLIASHHLRIEAASLGIDTIDASSEAITFTFG
KHHRINPATIVAIMQSDKNYRLTGADKLRVSIGIEDVMQRVQIIKNIMKQLAVDAG
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgctgcttcattcgcattgcctaaaaccagacagactgtaatctggtctgat
ttaaatgctggtagtctgccattattacttagccagcatttacctgaaaaaaaactgaaa
attattttaactgcagatgccgaacaggcaatccgtattcaggcagcatggcactttttt
gatcctgctgcacgtatcatgtttttcccggactgggaaactctgccctacgaacatttt
tctcctcatcaggaactggtatcagagcgactaagtacattgtggcaactaaaaaacgga
ctggttgacgttttattgttaccgctggcaacagccatgcaaaaaattgcccctccttca
tttttgctgggacatactttctggctgaaaaccgggcaggaactgaatattgaagcattg
aaacacagcctggttgaagccggctacaatcatgtttctcatgtggtagcgaccggagaa
ttcgccatgcgtggcggtattctcgatatttttccaatgggcagtgacaccccgtttcgt
ctggatttatttgacaatgaaattgataccatcaaaacatttgatgcagacagccagcgt
acattaaccactgtagatgaaatccgtctgttaccggcacatgaatttccaaccgacagt
gatgcacagaaaatattccgcagccgctttcgggaagaaatcaatagcgatgcccgaaaa
gcaactgtttataatgcagtatctgaaggacatttcggggcgggtgttgagtattacctg
cctttattttttgaagaagaatgtgtcagtatctttgattacacagatgatgaagccatt
ctggtttgtctgggtgatattcatcaagaatctgcccgtatctggcaggatgtcaaacaa
cgctacattctggcacaaggcgatccggcctatcccccgctggcaccagattatctttat
cttagtgaagaccagttcggggcacgtattaaatcttatgcgcgtcttgttccacaaatc
agtgaagacactacttatacgctgccaagtgtcgcagtagacagacaggctgatgatccg
ctgcatacactgaaaaattttctccaacaatggtcaggacgggtactgatttgcgcagaa
agtctcggacgccgggaaaccatgctcaattttatgcgccagtacagtttacagccagat
attgtcaatagctggcaggactttctgaacagtaattccagcttgtgcttgactattgcg
ccgttaagttacggttgcctgctgacagatcagcaactggccattattactgaggctgat
ttataccagtatattattcgcggccggcgtacaagacgcaaacatagtgctgtttcagac
ggcatgttgcgcgatttggctgaaatcaaaattggtgatccggtggtacatgaacaacat
ggtatcggacgctatcagggtctagtaactctggatttaggtgaaggtgcctgtgaaatg
atgctactggagtatgctgaaggctctcagttatatgtacctgttagtcagctccagctt
atttcccgctatgcaggtagtgctcatgataacgtcagtttgtataaactgggtcatgga
gcatgggataaagcacgacataaagccgcagaaaaagccagagatacagctgccgaatta
ttaaatctatatgctcagcgtgaagctcagcaaggccaccgttttagtctgaatgagatg
gattatcaggcttttgccaatggctttggctatgaagaaaccgaagatcaggctacggca
atcgctgcgaccataaaagatttatgtgctgaaaagcccatggacagactgatttgcgga
gatgtaggctttggtaaaactgaggttgcactacgcgccgcttttgtagcagcaatggct
ggtaaacaggtggtagtacttgcaccaactacactgcttgttgagcaacatgcacaaaat
tttgctgatcgctttgcagactttccgattaaagttgcccagctttcccgctttaatacc
agtaaacaaacacaggccacacttgccggactggctgacggcacagtagatattgtgatt
ggtacccataaactggttcagccggatgtccattttaaaaatctgggactggttattata
gatgaagaacatcgctttggcgtacgtcagaaagaacagcttaaacgtctgcgtgctaat
gtagatgtgcttacactgaccgcaacaccaattccgcgtacattaagtatggcgctggag
ggcctgcgtgatttttcattgattaccacagctccaagccgccggctggctgtaaaaacc
tttgttcgtccttacagcgatggtttaatacgagaagccgtattacgtgaactgaaacgt
ggcggacaggtatttttcctgcacaatgaagttgatactattgctaacacttatgaaaaa
ttaactactttattacctgaagcccgtatcggtatcgctcatggacaactgcgtgaacgc
gaactggaacagattatgcgggattttcttcagcagcgttataacgtgttactgtgttca
actatcattgaaaccggaattgatatacccaatgccaatacgattattattgagcgagct
gataagtttggtcttgcccagttgcatcagctgcgtggccgtgtaggccgttctcatcat
caggcatatgcctatctactgataccggatgcaatgaccaaagatgcacagaaacgtctg
gaagccatagaaatggctgatgatctgggagccggatttacattagccatgcaggattta
gaaatccgtggtgccggcgaaattttgggtgaaggacagtctggtgaaatgattcaggtc
ggatttactttatataccgaaatgctcaagcaggccgtgcgcaatttgaagaaaggcaga
gagccggatctggatgccccgctgggtattaccagtgacattaaattacatagccctgct
ctgctgccggaaaattattgcccggatattcatgccagactggtgttgtacaaacgcctg
gccagctgtgaaacagaagctgagatagaccagatacacgaagaactgatcgaccgtttc
gggcttcctgaaccggccgtctccacgttgattgccagccatcatttacgcattgaagca
gccagcttaggcatagacacaattgacgccagtagtgaagccattacttttacttttggc
aaacatcatcgtattaaccccgcaactattgtagccattatgcaaagtgataaaaactac
cgtctgactggagcagataaactcagagttagcattggtattgaagacgttatgcaacgt
gtccagattattaaaaacattatgaaacaacttgcggttgatgctggctaa
DBGET
integrated database retrieval system
