Snodgrassella alvi: SALWKB2_1004
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Entry
SALWKB2_1004 CDS
T03063
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
salv
Snodgrassella alvi
Pathway
salv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SALWKB2_1004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_1004
Enzymes [BR:
salv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SALWKB2_1004
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SALWKB2_1004
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SALWKB2_1004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_8
Zn_ribbon_Nudix
Thiolase_N
DUF3090
Zn_ribbon_6
Zn_ribbon_TFIIB
TRAF6_Z2
AAA_13
Zn_Tnp_IS91
Ribosomal_S13
DZR
IBR_1
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AHN28386
LinkDB
All DBs
Position
complement(1105638..1106465)
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETTLRGIAPFIENQTISQVEVRQPRLRWPIIDNLGEQLGGEKVLSVRRRAKYL
LIELASGTLIIHLGMSGSLRVFTDFTAPPVQKHDHVDIAFSNGTLLRFHDPRRFGAVLWF
IGLIEQHPLLVNLGPEPLSQDFNTDYLLQKLSNQKRAIKTAIMDNKIVVGVGNIYANEAL
FRTGIHPAIPAMKLNKQQISALTDAIKQILQEAITAGGSTLRDFVNSAGTSGYFQLQHQA
YGRAGEPCPQCGHPIEKMILGQRSSFYCPQCQKKR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttaccggaagtagaaacaacgctgcgcggaatcgctccttttattgaaaat
caaactatttcacaggtagaagtgcgtcagccgcgtttacgctggccgataatagataat
ctaggcgaacagcttggcggcgaaaaggtattatcagtcagacgcagagctaaatacctg
ctgattgaattagcttcaggcacattaattattcatctgggtatgtcaggcagtttacgc
gtctttactgactttactgctccgccagtacaaaaacatgatcatgtagatattgctttt
agtaatggtacgctcttacgatttcatgaccccagacgtttcggagctgttttatggttt
atcggactcattgaacagcatcctttattagttaacctcggaccggaaccactcagccag
gattttaatactgattatttgctacaaaaactttcaaaccagaaacgtgcgattaaaaca
gcaattatggataataagattgttgtcggtgtaggcaatatctatgctaacgaagctttg
ttccgtactggtatccatccggccattccggctatgaagctgaataaacagcagattagc
gcactgactgatgcaatcaaacagatactacaggaagccattacagcaggtggcagtact
ttaagggattttgtaaatagtgctggtaccagtggttattttcagctacaacatcaggca
tacggacgagccggtgaaccttgcccgcaatgcgggcatccgattgaaaaaatgattttg
ggacaaagaagcagtttttattgtcctcaatgccagaaaaaacgataa
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