Snodgrassella alvi: SALWKB2_1712
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Entry
SALWKB2_1712 CDS
T03063
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
salv
Snodgrassella alvi
Pathway
salv02020
Two-component system
salv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SALWKB2_1712
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SALWKB2_1712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salv03021
]
SALWKB2_1712
Transcription machinery [BR:
salv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SALWKB2_1712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_Crp_2
HTH_5
Motif
Other DBs
NCBI-ProteinID:
AHN29094
LinkDB
All DBs
Position
1907759..1909060
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AA seq
433 aa
AA seq
DB search
MLQLSTLELQELVAGWLADNPFLEEVENTSEDSFSDTQYVQPPQLGIMQDESDVWDTLAD
NPDMYELLRRQVCEYDLDDVTAAQVYFLIENLNEQGYLDSSLTDLVENAPLEWRLDETEL
AQALTILQQFEPTGVGARNLQESLLLQLENLSDESVDNDEIHTCARLLISKHFGQWLSTH
QFKQLCRQLPQFSANTLEAACKLIGALNPYPCYGLPDRNGILSVRPDMEVYINKSGKWQI
RLLHDTFPQLRIEPGVEEWIEQKSTEMDTMCKNKWQEAQTCLHSLQMRKTTLQRLGEWIL
QQQQDFFSFGSLALAPLTIKETAQALELAESTVSRAINQKYLTCSQGVFPLRYFFNQSVA
ATDDGTGNSQTAIKSLLQSIINGEDPQHPYSDTHLVNQLAKQGINLARRTVAKYREDLKI
PPAHQRKVQYSNH
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcagctgtctacgctggaattacaggaactggtagccggctggctggcggataat
ccttttcttgaggaagtagaaaatacatctgaagacagcttttctgatactcagtatgta
cagccgccacagctgggtattatgcaagacgaaagtgatgtctgggacacgctggccgac
aatcctgatatgtatgaattgctgcgccggcaggtatgtgaatacgatctggatgacgtt
acggcagcacaggtgtattttctgatagagaatctgaatgagcagggttatctggacagc
agtttaactgatctggtagaaaatgcaccgctggaatggcggctggacgaaacagagctg
gcacaggcgctgacgattctgcagcagtttgagcctactggtgttggtgctcggaattta
caggaatccctgttactgcaactggaaaatctgtctgacgaatctgtcgataatgatgaa
attcatacctgcgcgcgcttactgattagcaaacactttggtcagtggctgagtacccat
cagtttaaacaactttgccggcaactgccccagttttctgcaaacacacttgaagcagcc
tgtaaactcattggcgcactaaatccttatccctgttacggattacctgatcgtaatggt
attctgtctgtacgccctgatatggaagtttatatcaataagagtggcaaatggcagata
cgccttttgcatgatacttttcctcagctgagaatagaacccggtgtcgaagagtggata
gagcaaaaaagcacagagatggatactatgtgtaaaaacaaatggcaggaagcacaaacg
tgtcttcacagcctgcagatgcgtaaaaccactctgcaacgtctgggcgaatggattttg
cagcaacagcaggattttttcagttttggttctctggcgctggctcccttaaccattaaa
gaaacagctcaggctctcgaactggcagagagtactgtttcacgggcaatcaatcagaaa
tacctgacctgttcacaaggtgtttttcctctacgctattttttcaatcagtctgttgca
gcaacggatgatggaacaggtaacagtcagacagcaattaaatcactgttgcaaagtata
attaacggagaagacccgcaacatccctattctgatacacatttggtaaatcagctggct
aagcagggtattaatctagcccggcgcacagttgcaaaatatcgtgaggacttgaaaatt
cctccggcgcaccaacgtaaagtacagtacagtaatcattaa
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