Snodgrassella alvi: SALWKB2_1738
Help
Entry
SALWKB2_1738 CDS
T03063
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
salv
Snodgrassella alvi
Pathway
salv03030
DNA replication
salv03430
Mismatch repair
salv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALWKB2_1738
03430 Mismatch repair
SALWKB2_1738
03440 Homologous recombination
SALWKB2_1738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salv03032
]
SALWKB2_1738
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_1738
Enzymes [BR:
salv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SALWKB2_1738
DNA replication proteins [BR:
salv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SALWKB2_1738
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SALWKB2_1738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
UvrC_M
GIY-YIG_UvrC
Cho_C
GIY-YIG
Rv2179c-like
RNase_H_2
DUF5399
DNA_pol_A_exo1
Phage-tail_1
KH_DUF2096_C
Motif
Other DBs
NCBI-ProteinID:
AHN29120
LinkDB
All DBs
Position
1928962..1930359
Genome browser
AA seq
465 aa
AA seq
DB search
MFSDQQLAFVDIETTGGRTTSDRITEIAVIYTEAGQQQPQTFHTLLNPDTSIPPFIQSLT
GISNKMVEKAPYFDNEIADRLAAIFKERIFIAHNVRFDYGFIKAAFKRLGRTFNPQQLCT
VKLSRLLYPEHKHHGLDKIVARHNIDMQNRHRAFADARAIYDFWQQLRHNFPADILHQAC
KTIMQRPSLPAHLHSDVLDNISDDYGVYLIYGDNDIPLYIGKSKQVKTRLMSHFSQDVHN
SKEMSLSQQARKIDIIPCSGELDALLTESAQIKQRQPILNRRLRRQKDLFSFRLHTNTNG
YNTLSIVPMRHVQLNREQHYYGLFHSKSDAQKSIKNIISNTDLCLQTLGIEKGSNNRPCF
RHQLHQCSGACINKITADMHNLKLALALQKIKLAAWPFSSYAYIKEQHKYHIFHHWIYLG
SAGNTDELQTLLNQPQGQLDRDIYQIIRQHKHLLQALNPAHVCPD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagatcagcaacttgcctttgtcgatatcgaaactaccggcggacgcaccacc
agtgaccgtattaccgaaatcgcagttatttacacagaagccggacagcagcagccacaa
acttttcataccctgcttaatcccgataccagcattccgccttttattcagtctcttacc
ggcatcagcaataaaatggtagaaaaagcaccttatttcgataatgaaattgccgaccgg
ctggcagccatcttcaaagagcgaatctttatagcgcacaatgtgcgttttgattacggc
ttcatcaaagctgctttcaaacgtctgggcagaacattcaacccgcagcaactatgcacc
gttaaactgtcgcgtctgctttatcccgaacacaaacatcacggactggacaaaattgtt
gcccgccacaacatcgacatgcaaaaccgtcaccgggcctttgccgatgcccgggctatc
tacgacttctggcagcagctcagacacaactttcccgcagacatcctgcatcaggcctgt
aaaaccatcatgcagcgccccagcctgcccgctcacctgcacagcgatgttctggataac
atcagcgacgattacggcgtgtaccttatttatggtgacaacgacattcctctgtatatt
ggcaaaagcaaacaagttaaaacccgcctgatgagccatttcagtcaggatgtacacaac
agcaaagaaatgagcctgtcacagcaagccagaaaaatcgacattatcccctgtagcggt
gaactggatgccctgctcaccgaatcagcccagattaagcagcgccagcccatcctcaac
cgccgcctgcgccgtcagaaagacctgttcagcttccggctgcataccaatactaacgga
tacaacaccctgagcattgttcccatgcgccacgttcagcttaaccgcgaacagcactat
tacggcctgtttcacagcaaaagcgatgcacagaaaagcattaaaaacatcatcagcaac
accgatctgtgcctgcaaactctggggatcgaaaaaggcagcaataaccgtccctgcttc
cgtcatcagctgcatcagtgcagtggtgcctgtatcaacaaaattaccgccgacatgcac
aacctcaaacttgcactggccttacagaaaattaaactggctgcatggccgtttagtagt
tacgcctatataaaagaacagcacaaataccacatctttcaccactggatttatctgggc
agtgccggcaataccgacgaattgcaaaccctgctcaatcagccgcaaggacagcttgat
cgcgacatctatcaaatcatccgtcagcataaacatctgctgcaagccctgaatcctgcc
catgtttgccctgattga
DBGET
integrated database retrieval system
