Snodgrassella alvi: SALWKB2_1833
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Entry
SALWKB2_1833 CDS
T03063
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
salv
Snodgrassella alvi
Pathway
salv03030
DNA replication
salv03430
Mismatch repair
salv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALWKB2_1833
03430 Mismatch repair
SALWKB2_1833
03440 Homologous recombination
SALWKB2_1833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salv03032
]
SALWKB2_1833
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_1833
Enzymes [BR:
salv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SALWKB2_1833
DNA replication proteins [BR:
salv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SALWKB2_1833
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SALWKB2_1833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
AHN29215
LinkDB
All DBs
Position
complement(2036130..2039576)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSKNFSYVPLRLHTEFSIEDGIVRIKEAVKRASALGIPALGISDLMNVFGMVKFYKACRN
AGIKPIMAVDVRLENPEQPDKPFRLMLVVKNHAGYLRLNELLTNAYVGEDRNPHQAIVRQ
QWLAEGDNTGLICLSGAQYGEIGQALLSQKPEQAAQALIKYRQWFGDGFYLEVQRLPERP
EWEAVVAGSVALAAEHQIAVVATHPVQFMDTDDFQAHEARVCIASGYVLADKRRPHDFVP
SQYFVTPEEMAARFADIPEALSNTVAIAQRCNLTLTLGKNYLPLFPTPEGMTLDDLLVQL
SNEGLRERMSFLYPDETERAQKMPEYQQRLDYELGIIIQMQFPGYFLIVQDFINWAKQNG
CPVGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQENRGRVI
QYVRHKYGVPAVSQIVTFGTMSSKSVVRDVGRVLDLPFGLCDRLSKLIPVEANKPLSLTK
AMEAEPQIRQLLQEEEAEELMTLALKLEDLTRGLGMHAGGVLMAPGKIADFCPIYQASGD
DASPVSMFDKDDVEQIGLVKFDFLGLRNLTIIEMTQKFILETTGQKVDVNHIPLDDAETY
ASIFARGNTTAVFQFESVGMKKMLVTARPTKFEEIIAFVALYRPGPMDLIPDFIRRMHGE
EKVEYLHPNLEPVLNSTYGVMVYQEQVMQAAQVCGGYTLGGADLLRRAMGKKKVEEMVKH
RAIFEAGAAEKGIDKQTANEIFNYMEKFAGYGFNKSHAAAYALVSYQTAWLKCHYLAEYL
AGTMSSELTNTDQLKIFVDDGIENGITFLPPSINESFYRFTPNNKKQIRYALGAIKGTGE
GAVEAIVRARETGGAFTDLFDFCQRVDRQHLNRRTIEALVRAGAFDELNPNRAQLLANIG
LAMENAEQVAANANQGGLFDMVEDAIEPLQMEKVAPWSLAVKLAEEKQAMGFYFSGHPFE
PYADKVRALVSSKLATLKPSNNKQKVAGFVTGVRYIMGKRGKFAVVQLEDGTAKQEVVVA
GQALEEYGASLKADQVLIMECKVAVDEYNGGDGLRITADDAFTLAQASARYARSLHLHIT
ADTPVGQLARLLEPYREQQAHVPLKFCCRHQQAYGELRADRNWLIKPEATLFDELYTLLG
DEAVQVSF
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaatttttcctatgttccattgcgtctgcatactgaattttctattgaagac
ggtattgtacggattaaagaggcagttaaaagagccagtgctttgggaatacctgcatta
ggtatcagcgacctgatgaatgtatttggcatggtgaaattttataaggcatgccgtaat
gcgggaatcaagccgattatggcggtagatgtgcgtctggagaatccggaacagccggat
aagccttttcgcctgatgcttgtggttaaaaatcatgcaggttatttgcgtctgaatgag
ttactgacaaatgcttatgtgggtgaagaccgcaatccgcatcaggcaatagtacgtcag
cagtggctggcagaaggagacaatactggcttaatctgtttatctggagcacagtatggt
gaaattggtcaggctttactgtcacagaaacctgagcaggctgcacaagctttaattaaa
taccggcaatggtttggtgatggtttttatctggaagtgcagcgtttgcctgagcggccg
gaatgggaagcagtggtagcgggtagtgtggcactggcggctgagcatcagatagccgtg
gtggcaacccatccggtacagtttatggatactgatgattttcaggcacatgaagctcgg
gtctgcattgccagcggatatgtactggctgataaacgccgtccgcatgattttgtgccc
agtcagtattttgttacgcctgaagagatggcggcacgttttgccgacatacctgaagct
ttatccaatacagttgctatagctcaacgctgtaatctgacgctgacactggggaaaaac
tatttgccgctttttccgacaccggaagggatgacgctggacgatctgttggttcagctg
agtaatgaaggattacgtgagcgcatgtcatttctgtatccggatgaaactgaacgagca
cagaaaatgccggaatatcagcagcgactggattatgagctgggaattattattcagatg
cagtttcccggttattttctgattgtgcaggactttattaactgggctaagcaaaatggc
tgtccggtaggtccgggacgtggttctggtgccggttcgctagtagcgtattcattgaaa
attactgatttggatccgttgcgttataacctgctgttcgaacgttttctgaacccggaa
cgggtatcaatgccggacttcgatattgacttttgtcaggaaaaccgtggtcgggttatt
cagtatgtacgccataaatatggtgtgcctgcggtaagtcagattgttactttcggtacg
atgtcgtcgaaatctgtggtacgcgatgtcgggcgtgtgctggatttaccgtttggtttg
tgtgaccgtttgtctaaactgataccggttgaagcaaataaaccactcagtctgacaaaa
gcaatggaagcagaaccgcaaatccggcaactattgcaggaagaagaagctgaagagcta
atgacgctggcactgaaactggaagatctgacgcgcggtctgggtatgcacgcaggcggg
gtgctgatggctccgggaaaaattgccgatttttgcccgatttatcaggcaagcggtgat
gatgcgtctccggtttcgatgtttgataaggatgatgttgagcagattggtttggtgaaa
ttcgactttctcggactgcgcaacttaaccatcatcgaaatgacgcaaaaatttattctg
gaaaccactggtcagaaggttgatgttaatcatattccgctggacgatgcagagacgtat
gccagtatttttgccagaggtaatacaacagcagtattccagtttgagtcggtgggtatg
aaaaagatgctggtgacagcacgtccgaccaagtttgaagaaattattgcgtttgtggct
ctgtatcgtccggggccgatggatctgattccggattttatccggcgtatgcatggtgag
gaaaaagtagagtatctgcatccaaatcttgaaccggtattaaattctacttacggggtg
atggtttatcaggaacaggtaatgcaggcggcacaggtttgcggcggttatacactgggt
ggtgccgatttgctgcgtcgtgctatgggtaagaaaaaagttgaggaaatggtgaagcat
cgcgccatttttgaggctggtgccgctgaaaaaggcatagataagcaaacggccaatgaa
attttcaattatatggaaaagtttgccggctatggtttcaataaatcgcatgctgcagct
tatgctctggtgtcttatcagactgcatggctcaaatgtcattatctggctgagtatctg
gccggtacgatgtccagtgaattgactaatacggatcagctgaaaatttttgttgatgat
ggtattgaaaacgggattactttcctgccaccgagtattaatgaatccttttaccggttt
actccgaataataaaaagcagattcgttatgcacttggagcaattaagggaactggcgaa
ggtgccgtagaggccattgtacgtgcgcgcgaaacaggtggtgcatttacagatttattc
gatttttgtcagcgagtagatcgccaacatctgaatcgccgtacgattgaggctttggta
cgcgccggtgcctttgatgaattgaatccgaatcgggctcagttgctggccaatatcggt
ctggcgatggagaatgctgagcaggtggctgccaatgcgaatcagggcgggctgtttgat
atggttgaagatgctatagagcctttacaaatggaaaaggtagcaccatggtcactggcg
gtaaagctggctgaagagaaacaggcaatgggtttttatttttccggccatccgttcgaa
ccatatgctgataaagtacgtgcactggttagcagcaaactggcaacactgaaaccatct
aataataagcagaaagtagccggttttgttaccggtgtccgctatattatgggaaaacgc
ggtaaatttgctgtggtgcagcttgaggatggtaccgctaaacaggaagttgtagtagcg
gggcaggcactggaagaatacggagccagcctgaaagcagatcaggtattgattatggaa
tgtaaggttgctgttgatgaatacaatggcggtgacggattacgtatcactgctgatgat
gcattcacgctggcgcaagccagcgcccgctatgcacgcagtctgcatttacacattact
gcagatactcctgtcggacaattggccagattactggaaccataccgtgaacagcaggct
catgtgccactgaaattttgctgccggcatcagcaggcatatggtgaattgcgtgcggat
agaaactggcttatcaagcctgaggctaccttatttgatgaactgtataccttgctaggc
gatgaggcggtacaggtgagtttctga
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integrated database retrieval system
