Snodgrassella alvi: SALWKB2_2288
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Entry
SALWKB2_2288 CDS
T03063
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
salv
Snodgrassella alvi
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
salv03016
]
SALWKB2_2288
Enzymes [BR:
salv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SALWKB2_2288
Transfer RNA biogenesis [BR:
salv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SALWKB2_2288
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AHN29670
UniProt:
X2HBD6
LinkDB
All DBs
Position
complement(2506828..2508717)
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AA seq
629 aa
AA seq
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MGKQIFYEESGQFKVAEIVQENDATFLVNTQHGKRAKIKASHVFLVFDGDAAQFLQQAAE
AAAGIDISLLWEAVGTESEFTAASAASEYFGNSSGNIELAATLMALYAAPMYFYKKNKGV
FKAAPAETLQQALAAIERRKQQEEQINGWIQELLVGRLPDEIAAEAKMILHAPDKQSLKY
KAVVKAADQKKTSLFALLQSVGAVPPLPEYFLDGFLLTQFPKGADCGHYPVPVMHNLPDA
DTSVRAFSIDDIETSEVDDAFSVRDLPNGNKLVGIHIAAPALAIDAESLLEKLIFERLST
VYYPGGKITMLPDNWIAAFSLDEGAARPAVSLYAEISPQFEVIRYESRIESVYIDCNLRI
ENIEQAFQPLQPRSDTEAFAHQHEMNWLYDFAVARMQARGKYDPERLPQYDYGIKLGTDN
TVHISVRERGAPIDTLVSELMIFANSTWAQMLDEAEMAGLFRVQPTGRVRMSTQSEPHIG
LGLKHYAWFTSPLRRATDYINQKQLISLLDPDAEPRFEPQDAMLFAVLRDFESAYAAYND
FQRHMEAYWSLIYIQQEQLQELTAQLIRDDLVRIEGLPLVSRVNGVPVDAMPKCRMKVSI
TGIDPIQVSVGLNYINVLLPADNASQISG
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaacaaattttttatgaggagtcaggtcagtttaaagtagcggaaatagttcag
gaaaatgatgctacttttctggttaatacacaacatggtaagcgggcaaaaatcaaggcc
agccacgtttttctggtgtttgatggtgatgctgcgcaatttttacaacaggctgctgaa
gcagctgccggtattgatatcagtctgctctgggaagcggtaggcactgaaagtgaattt
accgcagccagtgcagccagtgaatattttggcaatagcagcgggaatattgagctggca
gccacactgatggctctgtatgcagcgcctatgtatttttacaaaaaaaataaaggtgta
tttaaagctgcgccggcagaaacattacagcaggcgctggcagccattgaacggcgcaaa
cagcaggaagaacaaatcaatggctggatacaggaattgctggtcggtcgtctgccggat
gaaattgctgctgaagccaaaatgattctgcatgcacctgataaacaaagtctgaaatac
aaagcagtggtcaaagctgctgatcagaaaaaaacctcactgtttgccctgctccagagt
gttggtgcagtaccgcctctgcctgaatattttctggatggttttttacttactcagttt
cccaaaggtgcggattgtggtcattatcctgtaccggttatgcacaatctgccagatgcc
gatacctcagtacgcgcattttccattgatgacattgaaaccagtgaggtagatgatgca
ttcagtgtgcgagacctgcccaatggcaacaaactggtcggaattcatattgctgccccg
gctctggcaatagatgctgagtctttgctggaaaagctgatatttgaacgtttaagtact
gtgtattatcccggcggtaaaattaccatgctgccggataactggatagctgctttcagt
ctggatgaaggagcagcacgaccggcagtcagtctgtatgctgaaatcagtccgcagttt
gaagtaatacgttatgaatcacgaattgaatcggtgtatatagactgtaatttacgtatt
gaaaatattgagcaggcatttcagcctttgcagccgcgcagcgatactgaagcttttgca
catcagcatgaaatgaactggttatatgattttgctgtggccagaatgcaggcgcggggt
aaatatgatccggaacgtttaccgcagtacgattatggaattaagcttgggacagataat
actgtacatatcagtgtgcgtgaacgcggagcaccaattgatacgctggtcagtgaactg
atgatttttgccaacagcacctgggcgcagatgctggatgaggctgaaatggcgggatta
ttccgtgtacagcctaccggcagagtacggatgagtactcagtctgaaccgcatattggt
ctggggctgaaacattatgcctggtttacttcaccactgcgccgtgctactgattatatt
aaccagaagcagctaattagtttactggatccggacgcagagccacgttttgaaccgcag
gatgccatgctgtttgcggtattgcgtgattttgagtcggcttatgcagcctacaatgat
tttcagcgccatatggaagcatactggagtctgatatatattcagcaagaacagttgcag
gagctgaccgctcagttaatacgtgatgatttagtacgtattgaaggcctgccactggta
agccgtgtcaacggtgtaccggttgatgccatgccaaaatgccggatgaaggtatcgata
accggaatcgatccgatacaggtaagtgtcggattaaactatattaatgttttgttgccg
gcagataatgccagccaaatatccggttga
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