Streptomyces alboniger: CP975_16790
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Entry
CP975_16790 CDS
T06908
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
salw
Streptomyces alboniger
Brite
KEGG Orthology (KO) [BR:
salw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salw03019
]
CP975_16790 (hrpA)
Enzymes [BR:
salw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP975_16790 (hrpA)
Messenger RNA biogenesis [BR:
salw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP975_16790 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
SLFN-g3_helicase
PhoH
ResIII
TsaE
DUF6139
Motif
Other DBs
NCBI-ProteinID:
QEV18924
UniProt:
A0A5J6HKB0
LinkDB
All DBs
Position
3781819..3785802
Genome browser
AA seq
1327 aa
AA seq
DB search
MSTQPALALDTLAPRLSELSLRDEHRIGRRLEGARRIRKPEARAAVLAEIAADVEKAEAR
MAERGSRVPAITYPEQLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEEMDTPLGEAVGWKVRFTDQVNPDGTFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDSDDSDRDQITAITDAVEELQAEGKGDILVFLS
GEREIRDTADALNKKNYKFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVP
GIKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSEDDFL
SRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPT
QKDPKKRLTQQGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPAEKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKAEYLNFLRIREWQDIY
TQLRTVAKQLGIHLNEDDAPDDRVHISLLSGLLSHIGMKDVKESKESKEKDPKQRGGGRG
EYIGARNAKFAVFPGSALFKKPPRFIMSAELVETSRLWARVNARIEPEWVEPLAEHLLKR
TYSEPHWEKDQAAVMAIEKVTLYGVPIVTDRKVNYGRIDPEVSRDLFIRNALVEGDWRTH
HKFFAANRKLLTEVEELEHRARRRDILVDDETLFDFYDQRVPADVVSGAHFDSWWKKKQR
EEPELLDFERSMLINEKAGDVSKDDYPDSWRQGPLKFKVTYQFEPGADADGVTVHIPLQV
LNQVTDEGFDWQIPGLREEVVIELIRSLPKPIRRNYVPAPNFAKAFLERAVPLQEPLHVT
LARELQRMVSVPVAPDDFDLTRVPDHLKITFRITDERRRKLAEDKDLEALKLRLKPKARK
ALSQAAAATAERTGGSAVERTGLTDWSIGTLSHVFETRRAGQPVKAYPALVDDGDTVSVR
LFDTEAEQRQAMWRGTRRLVLRNIPVNPGKFASDKLTNQQKLALSANPHGSIQALFDDCA
MAAADKLIADFGGPAWDEESYRKLFDKVRAEIVDTTVRAVGQVQQVLAAWQACERRLKSA
KSPALLANLSDVREQLNALIKPGFVTETGLRRLPDLMRYMVAADRRLQQMPTNVQRDTAR
MEKVREMRDEYLWLLEQLPRGRPVPQEVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVK
AIDAAAP
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcagcccgccctcgccctcgacaccctcgccccccgcctgtccgagctctcg
ttgcgcgatgagcaccggatcggccgccggctggagggtgcgcgccgcatccgtaagccc
gaggcccgcgccgctgttctcgccgagatcgcggcggacgtggagaaggccgaggcgcgg
atggccgagcgcggctcccgcgtgcccgcgatcacgtatcccgagcagctgccggtcagc
cagaagaaggacgagatcgccgaggcgatccgcgaccaccaggtcgtgatcgtcgcgggc
gagaccggttcgggcaagaccacgcagatccccaagatctgcctggagctgggccggggc
gtgcgcggcatgatcggccatacgcagccgcgccgcatcgcggcccgtacggtcgccgag
cgcgtggccgaggagatggacacgccgctgggcgaggccgtcggctggaaggtccgcttc
accgaccaggtgaacccggacgggacgttcatcaagctgatgacggacggcatcctgctg
gccgagatccagaccgaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcc
cacgagcgctcgctcaacatcgacttcctgctgggctacctcgcccagctgctgccgaag
cgccccgacctcaaggtcgtcatcacctcggcgaccatcgaccccgagcgtttctcccgg
cacttcggggacgccccgatcgtggaggtcagcgggcggacgtatccggtggaggtgcgc
taccggcccctcctcgaagaggactcggacgactccgaccgggaccagatcaccgcgatc
acggacgccgtcgaggagctccaggccgagggcaagggcgacatcctcgtcttcctctcc
ggagagcgcgagatccgcgacacggcggacgcgctgaacaagaagaactacaagttcacg
gaagtcctcccgctctacgcccggctctcgcacgccgagcagcaccgcgtcttccagcag
cacacgggcagacggatcgtcctcgcgacgaacgtcgccgagacctccctgaccgtcccg
ggcatcaagtacgtgatcgacccgggcacggcccgcatctcccgctacagccaccgtacg
aaggtgcagcgcctgcccatcgaggcgatcagccaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtcggacggcatctgcatccggctgtacagcgaggacgacttcctc
tcccgcccggagttcacggacgcggagatcctgcggacgaacctcgcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctccaggagctgggcgcgctggaccccacc
cagaaggacccgaagaagcggctcacccagcagggccgcaagctcgcccagctgccggtg
gacccgcgtcttgcccgcatggtcctggaggccgacaggaacggctgcgtgcgcgaggtc
atggtgatcgcggcggcgctctccatccaggacccgcgcgagcgccctgcggagaagcag
gcgcaggccgaccagcagcacgcccgcttcaaggacgagacgagcgacttcctcgcgtac
ctgaacctgtggcggtacgtccgtgagcagcagaaggagcgcggctcgtcgtccttccgc
cgcatgtgcaaggcggagtacctgaacttcctgcgcatccgtgagtggcaggacatctat
acgcagctgcgtacggtcgccaagcagctgggcatccacctgaacgaggacgacgcgccg
gacgaccgcgtccacatctccctcctgtccggtctcctctcccacatcgggatgaaggac
gtgaaggagtccaaggagagcaaggagaaggaccccaagcagcgcggtggcgggcggggc
gagtacatcggcgcccgtaacgccaagttcgcggtcttccccggctcggcgctcttcaag
aagccgccgcgcttcatcatgtcggccgagctggtggagacctcgcgcctgtgggcccgc
gtcaacgcgcggatcgagcccgagtgggtcgagccgctggccgagcacctcctgaagcgc
acgtacagcgagccgcactgggagaaggaccaggcggcggtgatggcgatagagaaggtc
acgctgtacggcgtcccgatcgtcaccgaccgcaaggtgaactacggccgcatcgacccc
gaggtctcccgcgacctgttcatccgcaacgcgctcgtcgagggcgactggcgcacgcac
cacaagttcttcgccgccaaccgcaagctgctcaccgaggtcgaggagctggagcaccgg
gcccggcgccgcgacatcctcgtcgacgacgagacgctcttcgacttctacgaccagcgg
gtgcccgccgatgtcgtctcgggggcgcacttcgactcctggtggaagaagaagcagcgg
gaagagcccgaactgctcgacttcgagcggtcgatgctgatcaacgagaaggcgggtgac
gtctccaaggacgactaccccgactcgtggcgtcaggggccgctcaagttcaaggtgacg
taccagttcgagcccggcgcggacgcggacggcgtcacggtccacatcccgctccaggtg
ctgaaccaggtcacggacgagggcttcgactggcagatcccgggcctgcgcgaggaggtg
gtcatcgagctgatccgctccctgccgaagccgatccggcgcaactacgtccccgcgccg
aacttcgcgaaggcgttcctggagcgggcggttcccctccaggagccgctgcacgtcacg
ctggcgcgcgaactccagcggatggtcagcgtgccggtcgcgcccgacgacttcgatctg
acgcgcgtacccgaccacttgaagatcacgttccggatcaccgacgagcggcgcaggaag
ctcgccgaggacaaggacctcgaagcgctcaagctgcggctgaagccgaaggcccgcaag
gcgctctcgcaggccgccgccgcgaccgccgagcggacgggcggctcggccgtggagcgc
acggggctgacggactggagcatcggcacgctcagccacgtgttcgagacgcgccgcgcg
gggcagcccgtgaaggcgtacccggccctcgtggacgacggcgacaccgtctccgtgcgc
ctcttcgacaccgaggcggaacagcggcaggcgatgtggcgcggcacgcgcaggctcgtc
ctgcgcaacatcccggtcaaccccggcaagttcgcctcggacaagctgacgaaccagcag
aagctcgccctgtccgcgaatccgcacggctccatacaggcgctgttcgacgactgcgcg
atggcggcggcggacaagctgatcgcggacttcggcgggcccgcctgggacgaggagtcg
taccgcaagctcttcgacaaggtgcgggcggagatcgtcgacacgaccgtgcgggccgtc
ggccaggtccagcaggtcctcgccgcctggcaggcctgcgagcggcgcctgaagtccgcg
aagagcccggcgctgctcgccaacctctcggacgtacgggagcagctgaacgccctcatc
aagccgggcttcgtgacggagacgggcctgcgccgccttcccgacctcatgcggtacatg
gtggcggcggaccggcggctccagcagatgcctacgaacgtgcagcgggacaccgcgcgc
atggagaaggtccgcgagatgcgggacgagtacctgtggctcctggagcagctgccgcgg
ggccggcccgtcccccaggaggtcctggacatccgctggatgatcgaggaactccgcgtc
agctatttcgcgcacgcgctgggcacggcgtatcccgtctcggacaagcggatcgtgaag
gcgatcgacgcggcggcgccgtga
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integrated database retrieval system
