Spiroplasma alleghenense: SALLE_v1c00480
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Entry
SALLE_v1c00480 CDS
T06597
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
salx
Spiroplasma alleghenense
Pathway
salx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SALLE_v1c00480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salx03021
]
SALLE_v1c00480 (rpoC)
03400 DNA repair and recombination proteins [BR:
salx03400
]
SALLE_v1c00480 (rpoC)
Enzymes [BR:
salx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SALLE_v1c00480 (rpoC)
Transcription machinery [BR:
salx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SALLE_v1c00480 (rpoC)
DNA repair and recombination proteins [BR:
salx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SALLE_v1c00480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF7674
Motif
Other DBs
NCBI-ProteinID:
AXK50724
UniProt:
A0A345Z295
LinkDB
All DBs
Position
52558..56322
Genome browser
AA seq
1254 aa
AA seq
DB search
MINSKNEKRMIKIDLASPDVIRSWSRGEVTKAETINYKTLKTEKDGLFDERIFGPTKNYE
CACGKYKKVKNKGKVCERCLVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIAAILD
LKTKELEEVVYFVSHIVLDPGTSKHLKKAQVLDLGNTKISIKTREKLTKTLEEIKDGFDL
SDPKQEIGFRRAEKMIEELRNASIPFSMDEAAGFIGKYTNAKFGIGASAIEELLKNIDLD
EAIVKIREELKEKRGTVEQNKMMKRLEVLDSLKKSNSRPEWMILHVIPVIPPDIRPIIQL
DGGRFTTSEINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKARP
VTGKDKRALKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAII
LFKPFVIKWLQENNFAENVKVAEKMIQSGDVKIWEALENVTKDRPVLLNRAPTLHRLGIQ
AFEPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHLPISPEAVAEARVLMLGSKAILGPKD
GKPIVTPTQDMILGNYYVTFEEKGQKGQGMLFSNPAEACSAYEAGVISLNSIIAIDVNSL
DEKHFETKKSGYLITTVGKILFNAIFTEKFPWLNNNDIYGAETTVDKFIVSDSTNVAEYI
ENVYETEQPIKKKDLSAIIDRYFRTYGSQKTAQMLDNMKDLGFKYSSKSGTTISAGDVVA
YKNKYEDFKVADEKVAKITEFYNMGMLTFSEKKRRVINVWSAVKDEIQVQLESVLKQDPK
NPVFVMADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGA
RKGMADIALKTADSGYLTRRLVDVSQEIIITAVDCNPSKGFEISDVVETKHDNIIVPLRD
RLIGRFVFADVEDKNGNVIVEKDTLVDEIMANNIIEAGVKNVQIRSVLTCDMEKGVCKKC
YGINLATGELVEIGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGGDDITQGLPRIKELLD
VTTPKGSVAIISQIDGVVSDVIEEDGIFTVIIKSNNDERKYKSQYGAIIRVKVGEAVSRG
QKLTEGAINIKDLLEVARIEDVENYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKII
DSGDTELLPGEIVTVKHYKAVITSAIMAGKKPPLAKYTIFGIKKAPLESESWLSSASFQD
TARVLVKAIIKGKIDKLEGLKENIMLGNLIPAGTGLTGSAEIIKRGKDSLANEY
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgataaattcaaaaaatgaaaaaagaatgattaaaatcgacttggctagtcctgatgtg
attcgctcttgatctcgtggagaggttaccaaagccgaaactattaattacaaaacttta
aaaacagaaaaagatggtttattcgatgaaagaatttttggaccaactaaaaattacgaa
tgtgcctgtggtaaatataaaaaagtaaaaaacaaaggtaaagtttgtgaacgttgttta
gttgaaattactgaatcaatcgttcgtcgtgaacgtatgggtcatattgaactagaagaa
ccagtgactcatatttgaatgttgaaagttgctccaagtcgtattgcagcaattttggat
ttaaaaactaaagaactggaagaagttgtttactttgtttcacacattgtattagatcca
ggaacttcaaaacaccttaaaaaagctcaagttttagatttaggaaatactaaaattagt
attaaaactagagaaaaattaactaaaactttagaggaaatcaaagatggttttgactta
agtgatccaaaacaagaaatcggtttccgtcgtgctgaaaaaatgattgaagaacttcgt
aatgcttcgattccattttctatggatgaggcagctggatttatcggaaaatacacaaat
gctaaattcggtattggagcaagcgcaattgaagaattattaaaaaatatcgatttagat
gaagcgattgttaaaattcgtgaagaactaaaagaaaaacgtggtactgttgaacaaaac
aaaatgatgaaacgtcttgaagttttagactcattaaaaaaatcaaactcaagaccagaa
tgaatgattttacatgttattccagtaatcccaccagacatccgtccaattattcaatta
gatggtggtcgttttacaacttcagaaattaatgatttataccgtcgtattatcattaga
aatgaacgtctaaaaaaagttaaatcaatgggagcgccaagcattattgtaaataacgaa
aaacgtatgttacaagaagcggttgacgccttattagataacgaacgtaaagcgcgtcca
gtaactggtaaagataaaagagctttaaaatctctaacatcaattttaaaaggaaaacaa
ggtcgtttccgtcaaaacttattaggaaaacgtgttgactactcaggtcgttcagttatt
gcgattggaccagacttaaaaatgtaccaagcgggaattcctcgtgatatggcaattatt
ttatttaaaccatttgtaattaagtgactacaagaaaataattttgcagaaaacgttaaa
gttgctgagaaaatgattcaatcaggtgatgttaaaatctgagaagctttagaaaatgta
accaaagaccgtccggttcttttaaaccgtgccccaactttacaccgtttaggaattcaa
gcttttgaacctaaacttgttaaaggaaaagcgatccgtttacaccccttagttacaact
gcatttaatgccgactttgatggggaccaaatggcggtccacttaccaatttctccagaa
gctgtggctgaagctagagttttaatgttaggaagtaaagcaattttaggaccaaaagat
ggtaaaccaattgtaaccccaactcaagatatgattttaggaaactactatgtaactttt
gaggaaaaaggtcaaaaaggtcaaggaatgttattttcaaatcccgccgaagcatgtagt
gcttatgaggctggagttatctcattaaattcaattattgcaattgatgttaactcattg
gatgaaaagcattttgaaactaaaaaatcaggatacttaataacaactgtaggtaaaatc
ttatttaacgcaatctttacagaaaaattcccttgattgaacaataatgatatttatgga
gcagaaactacagttgataaattcattgtttcagattcaactaatgtagcagaatatatc
gaaaacgtttatgaaacagaacaaccaattaagaaaaaagatttatcagcaatcattgac
cgttactttagaacttatggttcacaaaaaacagcgcaaatgctagataatatgaaagat
ttaggatttaaatattcatctaaatcaggaacaacaatttcggcaggagacgttgttgct
tataaaaacaaatatgaagactttaaagttgctgacgaaaaagttgctaaaattacagaa
ttctacaacatgggaatgctaactttctctgagaaaaaacgtcgtgtaattaacgtttga
tcagcagtaaaagatgagattcaagtacaattagaatctgttctaaaacaagatccaaaa
aacccagtattcgtcatggcagattctggagcaaggggtaatgtttctaactttactcaa
cttgtaggtatgcgtggtcttatgaatgaccccaaaggggatattaaagaaattccaatt
aaatcatcattccgtgaaggtttaacagtgtcagaatactttatttcaacccatggggct
cgtaaagggatggctgatattgccttgaaaaccgccgattcaggttacttaactcgtcgt
ttagttgacgtttctcaagaaatcattattacagcagttgattgtaatccttcaaaagga
tttgaaatcagcgacgttgttgaaacaaaacatgacaacatcattgtgccgctaagagac
cgtttaattggacgttttgttttcgctgatgttgaagataaaaatggtaatgtaattgtt
gaaaaagatactcttgttgatgaaattatggcaaacaacatcattgaagctggtgttaaa
aacgttcaaatccgttctgtgttaacttgtgatatggaaaaaggtgtatgtaagaaatgt
tatggaattaacctagcaactggtgagttggttgaaattggtgaaccagttggggtaatc
gctgcccaatcaattggggaaccgggaacccaacttacaatgcgtaccttccatactgga
ggggttgccggaggggatgatattacccaaggactacctcgtattaaagaacttcttgac
gttactactccaaaaggtagtgtggcgatcatttcacaaattgatggagttgtatcagat
gtaattgaagaagatggaattttcacagtaattattaaatcaaacaacgatgaaagaaaa
tacaaatctcaatacggagctatcattcgtgtaaaagttggtgaagctgtgtcgcgtggt
caaaaacttactgaaggagcaatcaatattaaggatttacttgaagtcgctcgaattgag
gatgttgaaaactacatcctaaaagaggttcaaaaagtttaccgattacaagggattgag
atttcagataagtatatcgaaattattgttaaacaaatgttgaacaaagttaaaattatt
gactcaggggatactgaattattacctggagaaattgtgacagtgaaacattacaaagct
gttatcacttcagctattatggctggtaaaaaaccaccattggcaaaatacacaatcttt
ggtattaaaaaagcgccgcttgaatcagaatcatgattatcttctgcttcattccaagac
actgctcgtgtattggttaaagcaattatcaaaggtaagattgataaacttgaaggacta
aaagaaaatatcatgttaggaaacttaattcctgcaggtactggattaacaggaagcgca
gaaattatcaaacgtggtaaagatagtttagcaaacgaatattaa
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