Spiroplasma alleghenense: SALLE_v1c00780
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Entry
SALLE_v1c00780 CDS
T06597
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
salx
Spiroplasma alleghenense
Pathway
salx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALLE_v1c00780 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salx03019
]
SALLE_v1c00780 (rnr)
03016 Transfer RNA biogenesis [BR:
salx03016
]
SALLE_v1c00780 (rnr)
Enzymes [BR:
salx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SALLE_v1c00780 (rnr)
Messenger RNA biogenesis [BR:
salx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SALLE_v1c00780 (rnr)
Transfer RNA biogenesis [BR:
salx03016
]
Prokaryotic type
tRNA degradation factors
SALLE_v1c00780 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
CCDC113_CCDC96_CC
Motif
Other DBs
NCBI-ProteinID:
AXK50754
UniProt:
A0A345Z2C5
LinkDB
All DBs
Position
88793..90901
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AA seq
702 aa
AA seq
DB search
MIKIILESLVQKSLQKVSDLSNKLKVSDFEQFQFSLNQLEEEHKIATTINGDVYLIGKDF
KVGTIKINDKGFGFVKDFNDPDNDYFVPAIFLAGSITNDEVVYKLEKENDGRLKGIVLAI
SKRTKKFLIGEINKSWDGKYLDFIPAENGFKNYRIVMVNKAAFKIEPDQLIKVKILEVKE
KKMFTKIVEIIGNSNKAVDRIISIAYEFDVPTEFKKETLKNAESVAKPINYNDAQVTRRT
NLIVDKNLVTIDGEDSKDLDDAIYVEKLANGNYKLLVAIADVSYYVEPRSALDSEALYRG
NSVYLANKVLPMLPKTLSNGVCSLNPNEDKLCLVCEMEFDSKGNIVSKKVYESIMNSKAR
LTYKEVNKFFETKETDRPKEIAEMLMVARELHEIIEKERDIRGSIDFDVKEAKVILDSDS
NVIDIVARTVGISEKLIENFMVSANESVAEIVFKKELPFIYRDHGKPKDENLIEWYGMLS
NFGINPKLTDSDKLNPRNIRHTLQEISKQIPDRDERELINITLLRFMEKAEYNLDNIGHF
GLASECYTHFTSPIRRYSDLIVHRYLKQYLIDKDLNPKSLTRNENFINRACTIINDTEKK
GVNTEREVNKVCMAEYMTKFIGQEFDGIVSAVLKFGVFVQLPNCVEGLVHITELGSDFSY
DEKMQTMVSKQNLVYKLGQKVRIKVKNADVKKRIIDFMFIKK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaattatcttggagagcttagtacaaaaaagcctgcaaaaagtttctgattta
tccaataaactaaaagtttctgattttgaacaatttcaattctctttaaatcaattagaa
gaagaacataaaattgctacgaccattaacggtgatgtttatctgattggaaaagacttt
aaagtaggaacaataaaaataaatgataaaggttttggattcgtcaaggattttaacgac
cctgataatgactattttgttccagcaatttttttagctggttcaataacaaatgacgaa
gttgtttataaattagaaaaagaaaatgatggtcgcttaaaagggatagttttagcaatt
tcaaaaagaactaaaaagtttttaattggggaaatcaataaatcatgagatggcaaatat
ttagattttataccagcagaaaacggatttaaaaactaccgcattgtcatggtaaacaag
gcggcttttaaaattgaacctgatcaattgattaaagttaaaatacttgaagtaaaagag
aaaaaaatgtttacaaaaatagtagaaataatcggtaattctaataaagccgtagatcga
attatttcaattgcttatgagtttgatgttccaaccgagtttaaaaaagaaactttgaaa
aatgctgaatcggttgcaaagccaatcaactacaatgatgctcaggtaacgagacgtaca
aatttaatagttgataaaaatttagtaacaattgatggtgaggattcgaaagatttagat
gatgctatttatgtagaaaaattagcaaatggaaattataaacttttagttgcaattgca
gatgttagttactatgtagaacctagatctgcattagattctgaagctctatacagagga
aactcagtttacctagcaaacaaggttttgccaatgctgcccaaaactttatcaaacgga
gtatgttctttgaatcctaatgaagataaattatgtttagtttgtgaaatggaattcgac
agcaaggggaatattgtaagtaaaaaagtttatgaatctatcatgaattctaaagctcga
ttaacatataaggaagtaaacaaattttttgaaaccaaagaaactgacagacccaaagaa
attgcagaaatgttgatggttgcaagagagctacacgaaattattgaaaaagagcgcgat
attcgtggttcaatagactttgatgttaaagaggctaaagtaattttggatagcgactct
aatgtaattgatattgtagctagaactgttggaattagtgaaaaattaattgaaaacttt
atggttagtgccaacgaaagcgttgctgaaattgtattcaaaaaagaacttccatttatt
tatcgagatcacggcaaaccaaaagatgaaaatttaatagagtgatatggaatgctttct
aactttggtataaacccaaaactgacagattcagataagttgaatccaagaaatatccgt
catacacttcaagaaatatctaaacaaattcctgaccgcgatgaacgagaattaataaat
atcaccttattaagatttatggaaaaagctgaatacaatcttgataatatcggacatttc
ggattagctagcgaatgctatactcacttcacttctcctattagacgttattcagattta
attgttcatcgatacttaaaacagtacttaattgataaggatttaaatccaaaaagttta
actagaaatgaaaacttcattaatcgcgcttgcacaataattaatgatactgaaaaaaaa
ggcgttaacaccgaaagagaagttaacaaagtttgtatggcggaatatatgacaaaattt
attgggcaagaatttgatggaattgtttcggctgttttaaaatttggagtttttgttcaa
cttccaaattgcgtcgaaggtctagttcatattactgaattgggttcagatttcagttac
gatgaaaaaatgcaaacgatggtaagtaaacaaaacttagtatataaattaggtcaaaaa
gttagaataaaagttaaaaatgctgatgttaaaaaaaggataattgactttatgtttatt
aaaaaataa
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