Salinivibrio sp. YCSC6: E8E00_00290
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Entry
E8E00_00290 CDS
T05946
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly03420
Nucleotide excision repair
saly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E8E00_00290 (uvrD)
03430 Mismatch repair
E8E00_00290 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saly03400
]
E8E00_00290 (uvrD)
Enzymes [BR:
saly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E8E00_00290 (uvrD)
DNA repair and recombination proteins [BR:
saly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E8E00_00290 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
E8E00_00290 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
OSTbeta
SseB_C
Motif
Other DBs
NCBI-ProteinID:
QCF34748
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All DBs
Position
I:62126..64306
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AA seq
726 aa
AA seq
DB search
MDVSTLLDGLNDKQREAVAAPLGNHLVLAGAGSGKTRVLVHRMAWLMRVEEASPFSVMAV
TFTNKAAAEMRGRIEQLMQGTASGMWCGTFHGICHRILRAHYLDANLPQDFQILDSDDQQ
RLLRRLIKAQNLDEKHWPAKQASWYINGKKDEGLRPKHIDTRHDPVESTWLRIYQAYQEA
CDRAGLVDFAEILLRTLELLRDKAVIREHYQARFQHILVDEFQDTNNIQYAWLRMMAGQQ
AHVMIVGDDDQSIYGWRGAKVENIQRFLDDFTTPQTIRLEQNYRSTSTILQAANTLIENN
ADRMGKSLWTEGKEGEPISVYAGFNELDEARFVVGKIKTWQDEGGALTDSAILYRNNAQS
RVLEEALIQAGLPYRIYGGMRFFERQEIKDALAYLRLMANRNDDAAFERVVNTPTRGIGD
RTLETLRGAARDRGQTLWHTAEQILAEKALAGRAANALGRFIELVNALEDDTRDMALYQQ
TDAVIRHSGLRAMYEQEKGEKAQARVDNLEELVTATRQFTPPEEAEAEGMTPLSAFLAHA
ALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRL
CYVGMTRAMEKLYLTYAEMRRVYGKDMFHKISRFIRELPEACLEEVRMRANVSRPAASGG
RFSKTQTQENFNQTGFSLGQRVQHPKFGEGTIINFEGSGGQSRVQVAFNGEGIKWLVTQY
AKLEAL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcaactcttcttgacggactcaacgacaaacagcgtgaagccgtggccgcg
ccgctcggcaaccatttggtgctggcaggtgctggcagtggtaaaacccgggtgctggtt
catcgtatggcttggctaatgcgggtggaagaggcgtcgccgttctcggtgatggcggtc
accttcaccaacaaagcggcagcggaaatgcgcggccgtatcgagcaattgatgcaaggc
accgcctctggcatgtggtgtggcaccttccacggcatttgccatcgtattctccgagcc
cactatttggatgccaacctgccacaagacttccaaattcttgattcagatgaccagcag
cgcttgctacgccggttaattaaagcgcaaaacttggatgaaaagcactggcctgccaag
caagcgagttggtacatcaatggcaaaaaagacgaaggtttgcgtcccaagcacattgat
acccgccatgatccggttgagagcacttggctgcggatttatcaggcttatcaagaagcc
tgtgaccgcgccggtttggtagattttgccgagatcttgctgcgaaccttagagttattg
cgcgataaagcggtgatccgcgaacactatcaagcacgtttccagcacattttggtggat
gagttccaagataccaacaacatccaatatgcgtggctgcgtatgatggccggccaacag
gcgcatgtgatgattgtgggggacgacgaccaatccatttacggttggcgtggcgcgaaa
gtcgaaaatattcagcgttttctggacgatttcaccaccccgcagaccattcgtttggag
caaaactaccgctcaaccagtacgattttgcaagcggcgaacaccctaattgaaaacaat
gccgaccggatgggcaaaagcctgtggaccgagggcaaagagggtgagcccatctctgtg
tatgccggttttaatgaactggatgaagcgcgttttgtggtcggtaaaatcaaaacttgg
caagacgaaggcggcgcactcactgatagcgcgattttataccgcaacaacgcccaatct
cgggtgctggaagaagccttaattcaagccggcctgccttatcgtatctacggcggcatg
cgctttttcgagcgtcaggaaatcaaagatgcactggcgtatttacgtttgatggctaac
cgcaatgacgatgcggcgttcgagcgggtggtaaacacgcccactcgagggattggtgat
cgcacccttgagacgcttcgtggcgcggcgcgcgatcgcggccaaaccttgtggcacact
gccgagcaaattttggcagaaaaagcgctggcagggcgcgcggccaatgcattgggccgg
tttatcgagctggtcaatgcgctagaagatgacacccgtgacatggcactgtatcaacaa
accgatgcagtgatccgtcactccggcttgcgcgccatgtacgagcaagaaaaaggcgaa
aaggcgcaagcacgcgtcgataacttggaagagttggtgaccgccacgcgccaattcacg
ccgccagaagaggcggaagcggaaggtatgacaccactgtcggcattcttggcccatgcc
gcccttgaggccggtgaaggccaagcggacgagtttgatgatgcggtccaattgatgacc
ttgcacagtgccaaaggcctcgaattccccttagtctttatggtcggggtggaagagggc
atgtttcccagtcagatgtcagctgaagaagcgggccgcttagaagaggagcgtcgcctt
tgctatgtcggcatgacgcgagcgatggaaaaactctatctgacctacgcagaaatgcgc
cgtgtttacggcaaagacatgttccataagatctcgcgctttattcgtgagctgcccgag
gcctgtttggaagaggtacgtatgcgtgccaatgtctcacgccctgctgcaagcgggggt
cgtttttccaaaacgcagactcaggagaactttaaccaaaccggatttagtttgggtcag
cgggttcaacaccctaagtttggtgaaggcaccatcatcaactttgaaggcagtggcgga
caaagccgcgtgcaagttgcctttaatggggaagggattaagtggttggtgactcagtac
gccaaactggaagcgctttaa
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