Salinivibrio sp. YCSC6: E8E00_01875
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Entry
E8E00_01875 CDS
T05946
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
saly
Salinivibrio sp. YCSC6
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
saly03009
]
E8E00_01875 (srmB)
Enzymes [BR:
saly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E8E00_01875 (srmB)
Ribosome biogenesis [BR:
saly03009
]
Prokaryotic type
rRNA helicases
E8E00_01875 (srmB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCF35024
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All DBs
Position
I:complement(418383..419612)
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AA seq
409 aa
AA seq
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MRSFAELELDPELLSALDDMGYQRPTLIQSEVIPHGMDGRDILASAPTGTGKTAAFLLPM
LQHLLDFPRQKPGPARVLILTPTRELAIQVADEARALAVNTELKIFTITGGISYQDHAEQ
LGKTQDIVVATPGRLMEYIEAERFDCRAIECLVLDEADRMLDMGFASAVNRLSDECQRRS
QTMLFSATLEGRGVTGFTENLLTDPELINVEPPRRERKKITQWYHRCDDLAHKRALLKHI
LTEQAERAIVFVKTRERLADLRDYMQSQQLDCAWIQGEMQQAKRNNAISRFSEGKVNVLL
ATDVAARGIDVPDITHVINYDLPRTADVYLHRIGRTARAGKKGSALSLVEAHDQPMMERI
SRYMDEDVKERTIDGLKPKHKKAEHKKKKKKQTGKKAISAKKPKKRKKS
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaagctttgccgaacttgagctcgatcctgaattgctcagtgccctcgacgatatg
ggctatcaacgtccaacgcttatccaatccgaggttatcccccacgggatggatggacgc
gacattttagcctctgcgccaacaggtacaggcaaaaccgccgccttcttgttgccgatg
ctacagcacttgctcgactttcctcgccaaaagcctggaccggcgcgcgtgctgattttg
acccccacccgagagctcgcgattcaggtcgctgacgaagcgcgtgccttggcagtcaat
actgagctcaagattttcaccatcaccggtggtatttcttatcaagatcatgcagaacag
ttaggcaaaacacaggatatcgttgtcgccacaccggggcgactcatggagtacattgag
gcagagcgcttcgactgtcgcgccatcgagtgtttggtgttagatgaagccgaccgcatg
ctcgatatgggatttgccagtgcggtaaaccgtctctctgatgaatgtcagcgtcgcagt
caaaccatgttgttttccgccacacttgaaggtcgcggcgtcactggatttaccgaaaac
ttgttgaccgaccctgagctgatcaatgtggagccaccccgccgggagcgcaaaaaaatc
acccagtggtatcaccgctgtgacgatctcgcgcataaacgcgccttgctgaaacatatt
cttaccgagcaagccgagcgcgccattgtgtttgtcaaaacacgcgagcgtttagccgat
ctgcgtgattacatgcagtcacaacaactggattgtgcgtggatccaaggtgaaatgcag
caagccaaacgcaacaatgcaattagccggtttagtgaaggtaaagtgaacgtcttactg
gccaccgatgtcgccgcacgcggtattgatgtgccagatattactcacgtgattaactac
gacttaccgcgtaccgcggatgtctacttacaccgcattggtcgcaccgcacgcgcgggt
aaaaaaggctcggccttatcattggtagaagcccatgatcagccgatgatggaacgtatt
tcgcgctacatggatgaagatgttaaagagcgaaccattgatggcctgaagccaaaacat
aaaaaagcagagcataagaagaaaaagaagaagcaaaccggtaaaaaagctatttctgct
aaaaagccgaaaaagcgtaaaaagagctag
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