Salinivibrio sp. YCSC6: E8E00_04550
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Entry
E8E00_04550 CDS
T05946
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E8E00_04550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saly03019
]
E8E00_04550
03009 Ribosome biogenesis [BR:
saly03009
]
E8E00_04550
Enzymes [BR:
saly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E8E00_04550
Messenger RNA biogenesis [BR:
saly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E8E00_04550
Ribosome biogenesis [BR:
saly03009
]
Prokaryotic type
rRNA processing factors
E8E00_04550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF6554
Motif
Other DBs
NCBI-ProteinID:
QCF37201
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All DBs
Position
I:complement(1022101..1025007)
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AA seq
968 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPSGYTYQGRPNIKDVVKEGQEVIVQVDKEERGNKGAALTTFVSLA
GSYLVLMPNNPRAGGISRRIEGEERNQLKEAMSGLELPQGMGLIVRTAGVGKSAEELEWD
LKVLLNHWQAVKEAASSNPAPFLIHQESNVIARAIRDYLRRDIGEILIDSEKVFKRAQEH
IQLIRPDFVSRIKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGSDIEETALQTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENKLR
DSVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLSLSIL
RLMEEEAMKENTAQVLGIVPVPVASYLLNEKRRSVQHIEKYHNVKVVVVPNADLQTPHFD
VVRIRGGEEMASLSYHLPSQLESLKEAETREEPQQARPAKKREEPVLQGFAAPSSPAPAA
KPATETAPKQPSLLAKLGKFLSGLFASDNTSEATPSQASTQSSNRQSGSSTRQQRSKRDQ
SGRNKPRQNQAAPQKDEQDDNAQDRNRNNKPRRSNKSQDERRDNNRKVKKNRNEKPKSAQ
ADKVETAKKQPEKADNNADNKAEKTEKVKQRRQRRKLNRSVRVNKDQPNAMTASAQPQEP
AKGKDLQQVGADVAQQAKQQQTDNGQSQQDKPAREEKRRNRRSPRHLRASGQRRRRRPMV
KSPMPLTTGMASPEMAMGKVWSTEQPIKVKQDRRRQDKRQAASVIASGVARPEMAMGKVI
VMRTPSVAAAPTPEKKPAVEPVPTPPVVEATPSVAASPAPATTPEHDPNVALVTEKVIER
EAVITAPQSTIRYRRATSPMMKAPAPNQVVDHAPVRIAAFKVPNANAKAAGSAEARAAAQ
APATKPQY
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaacgcaactcaaaaggaagagttgcgcgtcgcattggttgacggtcaacgg
ctgtacgatcttgatatcgaaagccctggccatgaatcgaaaaaagctaacatctacaaa
ggacgtatcacccgtattgaacctagcctggaagcggcatttgttgattacggcgctgaa
cgacacggtttcctcccgctaaaagaaatcgcccgcgaatacttcccttccggttatacc
tatcaaggccgtcctaacatcaaagatgtggtgaaagaaggccaggaagtgattgtccaa
gtggacaaagaagaacgcggtaacaaaggcgcggcactgacgacctttgtctctttagca
ggtagctatttggtcttgatgccaaataacccgcgtgccggtggcatttcgcgtcgtatc
gaaggcgaagaacgtaaccagctcaaagaggccatgtcaggtcttgaattaccgcaaggt
atgggcctgattgtacgcaccgctggtgtcggtaaatcggccgaagaattagagtgggac
ttgaaagtactactcaaccactggcaagcagtcaaagaagcggcatcatccaaccctgcc
cctttcctgatccatcaagaaagtaacgtgattgcacgtgcgattcgtgactacttacgt
cgcgatattggtgagatcttgatcgacagcgaaaaagtcttcaaacgcgctcaagaacac
atccagttaatacgcccagactttgtcagccgcatcaaactgtatgaaggcgaagtgccg
ctgttcagccactaccaaattgaaagccagattgagtcggccttccaacgcgaagtgcgt
ctcccgtcaggcggatctattgttattgacccgaccgaagccttgacgtctatcgacatc
aactcggcacgggccaccaaaggcagtgatattgaagaaacagcgctacaaaccaactta
gaagccgcggaagagatcgctcgccagcttcgcttacgtgatttgggcggtttggtggtt
atcgattttatcgatatgacgcctgtgcgccaccaacgtgaagtggaaaataagctacgt
gattcggttcgcatggatcgtgcacgtgtgcaaattggccgtatctcacgctttggtctg
ctggaaatgtcacgccaacgcttgagcccgtctctcgccgaagccagccaccatatttgt
ccacgctgtaaaggaacgggtgttatccgtgacaacgaatcgctttctttgtcgattctg
cgtctcatggaagaagaagccatgaaggaaaacacggcgcaagttctaggtattgtccct
gtgcctgtcgcctcttacctgcttaacgagaagcgtcggtcggtacaacatattgagaag
taccacaatgttaaagtggttgtggtaccaaacgcggatctgcaaaccccacacttcgat
gtggtgcgcatccgcggcggcgaagaaatggcaagcttgtcgtaccatctgccaagccag
cttgagtcgctaaaagaagcggaaacgcgcgaagaaccacaacaagcgcgtccggcgaaa
aagcgtgaagaacctgtgttacaaggatttgccgcgccaagctcaccagcgccagccgcg
aagcccgccacagagacagcacctaaacagccaagcctgttggccaagttaggtaaattc
ttgtctggcctgtttgcaagtgacaacacgtctgaggcaacgccaagtcaagcgagcacg
caatcgagcaaccgccaatcgggttcatcgacgcgtcaacaacgtagcaaacgcgatcaa
agtggacgcaataaacctcgtcaaaatcaggccgcgccgcaaaaagacgagcaagatgac
aacgcgcaagatcgcaaccgtaacaataagccgcgccgtagtaacaaatcgcaagatgag
cgtcgcgacaataaccgtaaagtcaagaaaaaccgtaacgagaagccaaagtcagcccaa
gctgacaaggtagaaacggcgaagaaacagcctgagaaagcggacaataacgcggataac
aaggcagaaaaaacggagaaggtgaaacaacgtcgccaacgccgtaagctaaaccgcagc
gtgcgtgtcaacaaagaccagcccaatgcaatgaccgcgtctgcacaaccacaagaaccg
gcaaaagggaaagatctccaacaagtcggtgccgatgtggcgcagcaagctaaacagcaa
caaacagacaacggccaaagtcagcaagacaagcctgcacgtgaagagaagcgccgtaat
cgtcgttctcctcgtcacctgcgcgcaagcggccagcgtcgtcgtcgccgtccaatggtg
aaaagcccgatgccactcaccaccggcatggcctcgccagaaatggcgatgggtaaagtc
tggtcgaccgagcaacctatcaaagtcaaacaggaccgtcgtcgccaagacaaacgccaa
gccgcatctgtgattgcaagcggtgttgcacgtcctgaaatggcgatgggtaaagtgatt
gtgatgcgcactccgagtgtcgccgcagcgccaacgccagagaaaaagccagccgttgag
ccagtgccaaccccccctgtggttgaagccacgccatcggtagccgcatcaccggcacca
gcgactacaccggagcacgatccaaatgtggccttggtgacggagaaagtgattgagcgt
gaagctgttatcacagcgcctcaatcaaccattcgttatcgtcgcgcaacatcaccaatg
atgaaagcgcctgcaccaaaccaagtggttgatcatgcgccagtgcgcatcgccgccttt
aaagtgcccaatgccaacgcgaaagcggctggcagtgctgaagcgcgagctgcggctcaa
gcaccggcaactaagcctcagtattga
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