Salinivibrio sp. YCSC6: E8E00_06065
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Entry
E8E00_06065 CDS
T05946
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E8E00_06065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saly03019
]
E8E00_06065
Enzymes [BR:
saly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E8E00_06065
Messenger RNA biogenesis [BR:
saly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E8E00_06065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
P-loop_SecA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QCF35763
LinkDB
All DBs
Position
I:1314058..1315452
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AA seq
464 aa
AA seq
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MSFSSLGLSAPLLKAVQEQGYTTPSPIQEKAIPAVIEGHDVMAAAQTGTGKTAGFTLPIL
ERLQAGKRARPNHVRTLILTPTRELAAQVHKNVEQYSQYTSLSSTVVFGGVKINPQMMKL
RKGADVLVATPGRLLDLYQQNAVRFSQLEVLVLDEADRMLDMGFIRDIRKILGLLPAKRQ
NLLFSATFSDEIRQLAKELVNNPVEISVNPANQTATGVEQCIYPADKKKKAPMLLSLIAD
NNWQQVLVFSKTKHGANRLSRYLEEYGVSAAAIHGNKSQGARTKALEKFKTGEVRVLVAT
DIAARGIDIAHLPQVVNFDLPHVAEDYVHRIGRTGRAGAVGNAVSLVCADEAKDLFAIER
LIKQVLPRHTLADFPVTNPLPESKLDTRPLKPKKPKKNKPRQDGQRSGDNARGHKPVGKN
RRHTDSAGDGKSRGTGNRPPRTRSDSNGANKPRRARPAAAKNSA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagtttctcctctttaggactatctgcacccctattaaaagccgtgcaagagcaaggc
tataccacaccttcaccgattcaggaaaaagcgatccctgcggtgattgaaggacacgat
gtcatggcggcggcgcaaaccggcaccggtaaaaccgcgggctttaccttaccgattttg
gagcgtttgcaggcgggtaaacgtgctcgccctaaccatgtacgtaccttgatcctgacg
ccaacgcgcgagcttgctgcgcaagtgcacaaaaacgtggagcaatacagccaatacacg
tcgctcagctcaaccgtggtatttggtggtgtgaagatcaatccgcagatgatgaaactt
cgcaaaggcgctgatgtgctggtggccactccgggacgcttgctggatctgtaccagcaa
aatgccgtgcgcttttctcagcttgaagtgctggtcttggacgaagccgatcgtatgctc
gatatgggctttattcgtgacattcgtaagatcttgggcttgctgccggctaagcgccag
aacttgctgttctccgccacattctcggatgaaattcgccaactggcaaaagaactagtc
aacaatccggttgagatttcagtcaatcctgcgaaccaaaccgcgactggggtagagcaa
tgcatttaccccgcggataagaagaaaaaagcgccgatgctgctgtcactgattgccgat
aataattggcagcaggtgttagtgtttagcaaaaccaagcatggcgctaaccgtttgtcg
cgttatctcgaagagtacggtgtcagcgcggcggcaattcatggcaataagagtcaaggc
gcgcgaacgaaagcgttagagaagtttaaaaccggtgaagtacgggtattggttgccact
gatattgccgcacgagggatcgatattgcccatttaccgcaagtggtaaattttgattta
ccccatgtggcagaagactatgttcaccgtattggtcgtactggtcgtgcaggtgccgtg
ggcaatgcagtgtctttggtttgtgcggacgaagcgaaagatttgttcgccattgaacgc
ttaattaaacaggtattgccgcgtcatactctggcggactttcccgtcacgaatccgttg
ccagagtcgaaattggatacgcgtccactaaagccaaagaaaccgaaaaagaataaaccg
cgtcaagacggacagcgctctggcgataacgcgcgcgggcacaaaccggtaggcaaaaat
cgacgtcataccgatagcgcaggcgacggtaagtcacgtggtaccggcaatcgcccacca
cgcacgcgcagcgatagcaacggcgcgaataagccacgccgcgcgcgacccgctgcggca
aaaaacagcgcctaa
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