Salinivibrio sp. YCSC6: E8E00_06850
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Entry
E8E00_06850 CDS
T05946
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
saly
Salinivibrio sp. YCSC6
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saly03019
]
E8E00_06850 (hrpA)
Enzymes [BR:
saly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E8E00_06850 (hrpA)
Messenger RNA biogenesis [BR:
saly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E8E00_06850 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
SLFN-g3_helicase
ABC_tran
T2SSE
ResIII
nSTAND_NTPase5
NACHT
NTPase_1
PhoH
TsaE
DUF6145
DUF7428
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QCF35909
LinkDB
All DBs
Position
I:complement(1510642..1514535)
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AA seq
1297 aa
AA seq
DB search
MSSRHHNTSETLFAALNDCMLQDRFRFKKRIHGAQKIKKDDAKQAVYDQIAAEMAQSMQR
LLARRANTPTVRYPEELPVSQKKDDIAEAIANNQVVIIAGETGSGKTTQLPKICMELGLG
VAGTIGHTQPRRLAARSVASRIAEELDVELGSSVGYKVRFNDKVSEATQVKLMTDGILLA
EIQHDRYLNQYDCIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPERFSKH
FNNAPMIEVSGRTYPVEVRYRPLVEEDDSDRDQLEAISDAVDELCLEGPGDILIFMNGER
EIRDTADYLQRRQLRDTEILPLYARLSAGEQNRVFQSHSGRRIVLATNVAETSLTVPGIK
YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICVRLYSEEDFLGRP
EFTDPEILRTNLASVILQMTALGLGDIQAFPFVQPPDSRHIKDGVRLLEELGAIKPGQAT
DKRKLTAIGKTLAKLPIDPRLARMVIEAPKHGALNEVMVIAAALAIQDPRERPADKQQQA
DEKHRRFADKESDFLAYVNLWDYVKEQQKALSNNQFRKQCKKDYLNYLRVREWQDVHYQI
TQVMKEQNAQFNQEPASYQAVHMALLAGLLSHIGLKDQEKNEYQGARNARFHIFPGSGLF
KKQPKWVMVAELVETSKLWGRIVARIQPEWVEPLAQHLIKRSYSEPHWSRKQAAVMASEK
VTLYGIPIVASRKVNYGAIDPVLSRELFIRSALVEGDWQTKHAFFRQNQKLLAEVEELEL
KSRRRDILADDDTLFDFYDQRLDHSVVSGRHFDTWWKKARQDNPDLLNFEKAMLLQGDAS
HVTELDYPNFWYQGNLKLKLSYQFEPGQDHDGVTVHIPLPILNQVSEEGFDWHVPGLRHE
LIVALIKSLPKPLRRNFVPAPNYADAVLQRVTPMEAPLLDSMEKALKQMSGVTIERDSWN
LAQLPEHLRIQFRVVDDKNRTLAESEDLHALKLSLKDKVQATLSDVADDDIEQQGLTQWT
FGELPKRYQQKRSGFEVKAYPALVDEKDSVAIRLFETEDQQHKAMQAGQRRLVLLNVPSP
IKYLHTHLPNKSKLGLYFNPYGRVLDLIDDCIACGVDKLIEQHGGLTWEAQAFEALKETV
RAELGDTVVDIAQQVEQILTHAFSINKKLKGKVDLSMAFAMSDIKAQLEGLIFKGFATES
GWQRLPDILRYMKAIERRLEKLPIDPARDRSHMLKIESVMNDYKALLNKLPKGKTLPDEV
KAIRWMIEELRVSYFAQQLGTPYPISDKRIKNAIAAI
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
ttgagttcacgtcatcacaacacgtcagagacactgtttgcagcgttaaacgattgtatg
ctgcaagaccgttttcgttttaaaaagcgcatccatggcgcacaaaaaatcaaaaaagac
gacgccaaacaggcggtgtacgatcaaattgccgctgaaatggcgcagagtatgcagcgc
ctgctcgcccgtcgagccaatacgccaaccgttcgctacccggaagagttgccagtcagt
cagaagaaagatgacattgccgaggcaatcgcgaacaaccaagtcgtgatcattgcgggt
gaaacgggctcaggcaaaaccactcagctgcccaaaatctgtatggagcttgggctaggc
gtcgccggtaccataggtcacactcagccacgtcgcttggctgcacgctcggtcgcctca
cggattgctgaagagcttgacgtcgagttaggcagtagcgtcggctataaagtgcgcttt
aatgacaaagtctcagaggcgacgcaagtcaaactcatgacggacgggatcttgttggcc
gaaatccagcacgatcggtatctgaatcagtacgattgcatcattatcgatgaagcccac
gagcgcagcctaaatatagactttattctcggctatttgcgcgagttattgcccaagcgc
cccgatctcaaagtcatcattacctcggcaaccatcgatcctgaacgtttttctaagcat
ttcaataatgcccctatgattgaggtgtctggccgtacttatccggtggaagtgcgctac
cgtccattagtagaagaggacgatagcgatcgtgaccagcttgaagcgatcagcgatgcg
gtcgatgagctgtgccttgaagggccgggtgatatcctaatctttatgaacggtgagcga
gagatccgcgacaccgccgattaccttcagcgtcgtcaactgcgcgataccgagatttta
cccttgtacgcaaggctttctgctggcgagcaaaatcgtgtattccaatctcactcggga
cgccggattgtactggccaccaacgtcgccgagacctcgctaaccgtaccgggcattaag
tatgtaattgatcccggcacggcacggatttctcgctatagctaccggaccaaggtgcag
cgactgccgattgagccgatttcacaggccagtgctaatcagcgtaaaggacgctgtggc
cgtgtgtcggaaggcatttgtgtgcgtctgtatagcgaagaggactttttaggccgtcct
gaatttaccgacccagaaattctgagaacaaatctggcttcggtgatcctgcaaatgacg
gcattagggctcggtgatattcaagcctttccgtttgttcagccacctgatagccgtcac
atcaaagatggtgttcgtttgctcgaagagctgggggcgatcaagcccggccaagccact
gataaacgtaagctgaccgcgattggtaaaaccctggccaaactgccgattgacccgcgt
ttggcacgcatggtgattgaagcacccaagcatggtgccttaaatgaggtgatggtgatt
gccgcggccttggctatccaagatccgcgtgagcgtccagcagataaacagcaacaagcg
gatgaaaagcatcgtcgttttgccgataaagaatcggacttcttggcctatgtaaatctt
tgggattacgtcaaagagcagcaaaaagcgctatcgaataaccagttccgtaaacagtgc
aaaaaagactatctcaattacttgcgggtgcgagagtggcaagacgttcactatcaaatc
acccaagtaatgaaagagcaaaatgcacaattcaaccaagaacctgccagttatcaggcc
gttcacatggccctgctcgccgggctattaagccacatcggcctgaaagaccaagaaaag
aacgaataccaaggcgcacggaatgcacggttccatattttcccgggttctgggcttttc
aaaaagcagcctaaatgggtgatggttgccgaactggttgaaacctcgaaactctggggg
cgaattgttgcgcgtatccaacctgaatgggtggagccactggcgcagcatttgattaag
cgcagctacagtgaaccacattggtcacgcaagcaagcggctgtcatggccagcgagaag
gtcacgctatacgggatcccgattgtcgccagccgtaaagtcaattatggcgccatcgat
ccggtgcttagccgtgagctgtttattcgttcggcattggttgagggagattggcaaact
aagcatgcctttttccgccaaaaccaaaagctgttggcggaagtggaggagctcgagctc
aaatctcgccggcgcgatattttggcagacgatgataccttgttcgacttttacgatcag
cgcctcgatcacagtgtggtcagtgggcgtcacttcgatacctggtggaaaaaggcgcgt
caagacaatccggatctgctcaactttgaaaaagccatgctattgcaaggcgacgctagc
catgtcacggagctggattaccctaacttttggtatcagggcaacctaaaactcaaatta
agttaccaattcgagccgggccaagaccatgatggggtgacggtgcatattccactgccg
atccttaatcaggtgtcagaagaaggctttgattggcacgtccccgggctacgtcacgag
ctaattgtcgcgctgattaaatctttgcctaagccgttacgacgtaactttgttccggca
ccaaactatgcggatgcggtcttgcaacgagtgacgcccatggaagcgcctttgctcgat
agcatggaaaaagccctaaagcagatgtccggtgtcaccattgagcgcgacagctggaat
ttggcgcaattgccagagcatctgcgcattcagttccgcgttgtggatgataagaatcgc
accttggctgaaagcgaagatcttcatgcactgaaactgtcactgaaagataaggtgcaa
gcgacgttatcggatgtggcagatgatgacattgaacagcaaggactcacccaatggaca
tttggggaattgccgaaacgttaccagcaaaagcgcagcgggtttgaagtcaaagcgtat
ccggctttagtcgatgaaaaagacagtgtcgcgatccgccttttcgaaacggaagatcaa
caacataaagccatgcaagcggggcagcgtcgattggtcttgctcaatgtgccatcgccg
ataaaatacctgcacacccatttgcccaataagtcgaaactcggtctgtattttaacccc
tatggccgtgttttggatttgattgatgactgcatcgcctgtggcgtggataaactcatt
gagcaacacggcgggttaacctgggaagcgcaagcattcgaagctcttaaagagacggtg
cgtgcggagctaggtgataccgtggtggatattgctcaacaggtcgaacagattttaacc
catgcctttagcatcaataaaaagctaaaaggtaaagtggatctttcgatggcgtttgcg
atgtcggatatcaaagctcagctagaagggctgattttcaagggctttgctaccgaatca
ggctggcagcggctgcccgatattttacgctatatgaaagcgatagagcgtcggttagag
aagctgccgattgatccagcgcgagatcgcagtcatatgctcaagattgaatctgtgatg
aatgactacaaggcgttgctgaataagttaccgaaaggcaaaactctccctgatgaggta
aaagccatacgctggatgattgaagagcttcgagtgagttacttcgcgcagcaactgggt
acgccttatccgatttcagacaagcggattaaaaacgccattgcggcgatttaa
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