Salinivibrio sp. YCSC6: E8E00_11220
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Entry
E8E00_11220 CDS
T05946
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
saly
Salinivibrio sp. YCSC6
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saly03016
]
E8E00_11220 (thpR)
Enzymes [BR:
saly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
E8E00_11220 (thpR)
Transfer RNA biogenesis [BR:
saly03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
E8E00_11220 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
Motif
Other DBs
NCBI-ProteinID:
QCF36676
LinkDB
All DBs
Position
I:complement(2421946..2422503)
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AA seq
185 aa
AA seq
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MRVFFALGLNESVNLAARKALADYKNQLSGEGRAVPDANLHLTLAFLGDVPESVLPALYE
EANAIRLSSFSLTLSQLAVWSGPNIACATVATPPAMLCDLAHRLSQLAAWSAQRDSHAFT
PHITLRRGVKTVQDLDGPPLPSLTFTCQRFGLYASPSHQATHGPRDSAGIALYQCLHAFD
LTSRN
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtatttttcgcgctgggcttgaatgagagcgtgaatcttgctgccagaaaggcg
ctggctgactataaaaatcagctatcgggggaagggcgcgccgtgcctgacgccaacttg
cacctcacgctagcgtttttaggagacgtgccggagtcggtgttaccagcgttgtatgaa
gaggccaacgctattcgtctctcctcattttccctgacattatcacaattagccgtctgg
tcagggccaaacatcgcttgtgccaccgtcgcgacgccgcccgctatgttgtgcgatctg
gcccatcgcttaagccagttagcagcttggtcagcacagcgtgatagtcatgcgtttact
cctcacatcacgttacgtcgaggggttaaaaccgttcaagatttggacggaccgccgcta
ccgtcgctaacatttacttgccaacgctttggtctctacgcttcgccttctcatcaagcc
acacatggcccgcgtgatagtgcggggatagccttataccaatgcttacatgcgtttgat
cttactagcaggaattga
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