KEGG   Salinivibrio sp. YCSC6: E8E00_13350
Entry
E8E00_13350       CDS       T05946                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
saly  Salinivibrio sp. YCSC6
Pathway
saly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:saly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E8E00_13350 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:saly03021]
    E8E00_13350 (rho)
   03019 Messenger RNA biogenesis [BR:saly03019]
    E8E00_13350 (rho)
Transcription machinery [BR:saly03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     E8E00_13350 (rho)
Messenger RNA biogenesis [BR:saly03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     E8E00_13350 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 AAA S1CSD-TOTE-2 FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: QCF37067
LinkDB
Position
I:complement(2859486..2860751)
AA seq 421 aa
MNLTELKTQPVSTLVALGESMGLENLARLRKQDIIFSILKQHAKSGEDIFGNGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNQVN
SDKPDNARSKILFENLTPLHASERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
TRSGTRREELLTKADELQKMWILRKIVHPMGEIEGMEFLIDKLAMSKTNDEFFDAMRRQN
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaactgaagactcaacccgtctcgacgctggttgcgcttggcgaaagc
atgggactcgaaaacctagctcgcttgcgtaaacaggacatcattttctcgatcctcaaa
cagcacgcaaaaagcggtgaagacattttcggcaatggcgtgctggaaattcttcaagac
gggtttggcttcctgcgtagcgcagacagctcgtatttggccggccctgatgacatctat
gtgtcgccaagccaaattcgtcgctttaacttgcgcacaggcgataccatcgcgggtaaa
attcgtccccctaaagacggcgagcgctacttcgcgctattgaaagttaaccaagttaac
agcgacaaaccagacaacgcccgcagtaaaatcctcttcgaaaacttaacccctttgcac
gccagcgaacgtatggtgatggagcgcggaaacggctcgacagaagacatcactgcccgt
gtgctcgacttagcctcgccaatcggtaaaggtcaacgtggtttgattgttgcgccgcca
aaagcgggtaaaaccatgctgctgcaaaacatcgcgcaaagtatcgcttacaaccaccca
gaatgtgagttgatggtgctgttgatcgatgagcgtccggaagaagtgaccgagatgcag
cgcttggtgaaaggagaagtggtggcatcgacctttgatgagccagcaagccgtcacgta
caagtggccgaaatggtaattgaaaaagccaagcgtttggtcgaacacaaaaaagacgtg
gtgatcctgctggactcgattactcgtctggcgcgtgcttacaacacagttgtaccgtct
tccggtaaagtattgactggtggtgttgacgccaacgccttgcatcgtcctaagcgcttc
tttggtgcggcccgtaacgtggaagaaggcggtagcttgaccattatcgcaactgcgcta
gtggatactggctcgaagatggacgaagtcatctacgaagaatttaaagggacaggtaac
atggagctgcacctgtcacgtaagattgccgagaagcgtgtcttcccagccatcgacttc
acgcgctctggcacccgtcgcgaagagttgctgaccaaagcggatgaactacagaagatg
tggatcctgcgtaagattgtccacccaatgggggaaatcgaaggcatggaattcttgatt
gataagctggccatgtcgaagaccaatgatgagttctttgacgccatgcgacgtcaaaac
tcctga

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