Salmonella sp. SSDFZ69: EOS98_13470
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Entry
EOS98_13470 CDS
T06160
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salz
Salmonella sp. SSDFZ69
Pathway
salz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EOS98_13470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salz03400
]
EOS98_13470
Enzymes [BR:
salz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EOS98_13470
DNA repair and recombination proteins [BR:
salz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EOS98_13470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZY98522
LinkDB
All DBs
Position
2682286..2685732
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD
LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD
AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaacaacgttacacgctgccgacaaaagcgggcgatcagcgccagttgggc
gaacttaccggtgccgcctgcgctacgctggtggcggagatagccgaacgccatgccggt
ccggtggtactcatagcgcctgacatgcaaaatgctctgcgattgcatgatgaaatccgc
cagtttaccgatcagatggtgatgaacctggcggactgggaaacgctaccgtatgacagc
ttctccccgcatcaggaaattatctcttcgcgcctgtccacgctctaccagttgccgtca
atgcagcgcggcgtcttgattgtaccggtaaacaccctgatgcagcgcgtttgtccgcat
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcggctgtcccgcgacgct
ctgcgcgcgcagcttgacagcgccggttatcggcatgtcgatcaggtgatggagcatggc
gaatacgcgacgcgcggcgcgctgttggatctctttccgatgggcagcgaacagccttat
cgcctcgacttttttgatgatgaaatcgacagcctgcgtctgtttgacgcggatacccaa
cgtacgctggaggaggtcgaggccatcaatttgttgcccgcgcacgaatttcctaccgac
aaagccgctattgagcttttccgtagccagtggcgcgatacctttgaggtaaaacgcgac
gccgagcacatctatcagcaggtcagcaaaggcaccctgcccgccgggatcgaatactgg
cagccgctctttttcagcgaaccgttaccgccattatttagctatttccccgccaatact
ctggtggtgaatactggctcgctggaaaccagcgccgaacgctttcaggccgatacgctg
gcgcgttttgaaaatcgcggcgtcgatcctatgcgcccgcttttgccgccggaagccctc
tggctacgggtagatgagctcttttccgagcttaaacgctggcctcgcctccagcttaaa
accgaccatctgccggaaaaagccgccaataccaatctcggtttccagaaattaccggat
ttggctatccaggcacagcagaaagcgccgctggacgcgctgcgtaagttcctcgaatct
ttcagcggtccggtgattttttcggtggaaagcgaaggacgccgcgaagcgctgggagag
ctcctggctcgcataaaaatcgcgccgaagcgaatattacgcctggacgaggcgcaggat
gcgggacgctatctgatgattggcgccgcagaacatggctttatcgacacccaacgcaat
ctggcgctgatttgtgaaagcgatctcttgggtgagcgggtggcgcgtcgccgcctggat
tcccgtcgtacgatcaacccggatacgttgattcgtaacctggcggagctccacgtcggt
caaccggtagtgcatctggagcacggcgttggacgctatgccggcatgaccactctggag
gctggcggcatcaagggtgagtatctgatgctcacctacgccaatgacgccaaactgtat
gtgccggtctcctcattgcatctgattagccgctatgccggcggcgcggaagaaagtgcg
ccgctgcataaactgggcggcgacgcctggtcgcgcgcccggcagaaagcggcggaaaaa
gtgcgcgatgtcgcagcggaactgttggatatttatgcgcaacgggcggcaaaagagggt
tttgcctttaagcatgatcgtgagcagtatcagttattctgcgacagcttcccgtttgaa
acgacgcccgatcaggcacaggcgattaacgccgtattgagcgatatgtgccaaccgctg
gcgatggacaggctggtgtgcggcgacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgcgttcctggcagtggaaaaccataaacaagtagcggtactggtgccgactacgctg
ctggcgcagcaacactatgacaacttccgcgaccgtttcgccaactggccggtacgcatt
gagatgctgtcccgctttcgcagcgccaaagagcagacgcaaatcctggcggaagccgcc
gagggtaagatcgatattctgatcggtacgcataaactgctacaaagcgatgtgaagctg
cgcgacctcggcctgctgattgtcgatgaagagcaccgtttcggcgtgcgccacaaagag
cgaattaaggcgatgcgcgccgatgtcgatattctgacgctcacggcgacgccgatcccg
cggacgctgaatatggcgatgagcggtatgcgcgatctctccattatcgccaccccccct
gcccgtcgtctggcggtaaaaacctttgtccgtgagtatgatagcctggtggtaagggaa
gcgattctgcgtgaaatcctgcgcggcggtcaggtttactatttgtacaatgacgtcgaa
aatattcagaaagccgcagagcggctggcggaactggtgccggaagcgcgaatcgctata
ggccacgggcagatgcgcgaacgtgagctggaacgggtcatgaatgatttccaccatcaa
cgttttaacgtgctggtgtgtactaccattatcgaaacggggatcgacattcccaccgct
aacacgatcatcattgaacgcgcggatcatttcggcctcgcgcagttgcaccagctgcgt
ggccgcgttgggcgctcgcaccaccaggcctacgcctggctgttgacgccacatcctaag
gccatgaccaccgatgcgcaaaaacggctggaggcgattgcgtcgctggaggatttaggc
gccgggtttgcgctggcgactcacgatctggagatccgcggcgcgggcgaactgcttggc
gaagagcaaagcggctcaatggaaaccatcggcttctcactctacatggaattgctggaa
aacgccgtcgatgcgctgaaagcaggccgcgaaccctcgctggaagatctcaccagtcag
caaacggaagtcgagctgcgaatgccgtcgttactgccggatgattttattccggatgtt
aatacccggctgtcattctataaacgcattgccagcgcgaagaacgaaaacgagctggaa
gagatcaaagtggaattgatcgaccgcttcggcctgctgcccgatccggcgcgtaatctg
ctggatatcgcccgcctgcgccaacaggcgcaaaagctcggcatccgaaaactggagggt
aacgagaaaggcggaacgattgagttcgccgagaaaaaccacgttgaccccgcctggctt
atcgggttgctgcaaaaacagccgcagcatttccgtctggatggtccgacgcgcctcaag
tttattcaggatttaagcgaacgtaaaacgcgtatagactgggtacgccagtttatgcag
caactggaagaaaacgctattgcataa
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