Salmonella sp. SSDFZ69: EOS98_17130
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Entry
EOS98_17130 CDS
T06160
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
salz
Salmonella sp. SSDFZ69
Brite
KEGG Orthology (KO) [BR:
salz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salz03400
]
EOS98_17130 (sbcC)
DNA repair and recombination proteins [BR:
salz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EOS98_17130 (sbcC)
Archaeal homologous recombinant proteins
EOS98_17130 (sbcC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_15
nSTAND_NTPase5
ABC_tran
nSTAND3
cobW
AAA_21
TsaE
ABC_ATPase
AAA_22
AAA_14
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AZY99192
LinkDB
All DBs
Position
3422957..3426097
Genome browser
AA seq
1046 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNRARNQPDGNLQAPRVELARCS
DGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAAFLNAKAKERAELLEELTGTE
IYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLADQQ
VQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQ
EQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKTWLAEHDGIRV
WRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTR
QRPLRHRLAALQGQILPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADV
RTICEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVK
TLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAG
WLAAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAP
EDEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLETLPQTDTADSDDDVPLDNWRQ
THDECVSLQSQLQTLQEQTTQEQQRAAEAIAHFDAALKNSPFDSQATFLAALLDEETVTR
LEKQQQTLESQLQQAKALSAQSAQALADHQQQPPAGLDPTCTEEQLAQRLAQLAQQLREN
TTRQGEIRQQIKQDADNRQRQRALMAEMKQTSQQVEDWGYLNALIGSKEGDKFRKFAQGL
TLDNLVWLANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSLA
LALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVKKINGLGYSKLDKAFAVE
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagtttgcgtctgaaaaacctgaactcgctgaaaggagaatggaaggtc
gactttaccgccgaaccgtttgccagtaacgggttattcgctattaccggcccgaccggc
gcgggaaaaaccaccttgcttgacgccatctgcctggcgctgtaccacgaaacgccgcgc
ctgaatacggtatcgcaatcgcaaaacgatttgatgacgcgcgatacagcggaatgtctg
gccgaagtggagttcgaggtaaaaggcgaagcctggcgcgcgttctggagccagaaccga
gcccgaaatcagcctgacggcaatctccaggccccacgcgtggagctggcgcggtgttca
gacggaaagatctttgccgataaggtaaaggataaactggagatgatcgccacgttgacc
gggctggactacgggcgcttcacccgttcgatgttgttatcacaggggcagttcgccgcc
tttcttaacgccaaagcgaaagagcgcgcagagcttctggaggagctcaccggcactgag
atttacgggcagatctccgcacaggtatttgaaaaacataaatcagcccgtctcgaactg
gaaaagttacaagcgcaggccagcggcgtcgccctattggcggacgaacagttacagcaa
ctggaagccagtttgcaggcgcttactgacgaagagaaacgcctgctggccgaccagcag
gtacagcagcagcaccttcactggctgacccgaaaaaacgagctccacactgaattacac
gcccggcagcaggcgctgtacgcagcgcaagaggcgcgagaaaaagcgcagccgcagctc
gcggcgttgacactggcgcaacctgctcgccagttgcgcccgcactgggagcgcattcag
gaacaaacccgcgccgttgagcgtgttcgccagcacagtgatgaagtgaatgctcgctta
caaagcgcatatcgcctgcgccagcgtatccgcgcctgcgcgcatcgacaattcacgcaa
ctgaacgccacagggcagcggttgaagacatggctggcggaacacgacggcatccgcgtc
tggcgcagcgaactggcggggtggcgagcattattaacacaacaatcccacgatcgggcg
caactgagccaatggcaacagcagttgctgagcgatacgcgtcagcgtgatgcgctaccg
ccgctcacgctcgacctcacgccacaggcgctggcggaagccagggcattgcatacccgg
cagcgtccgctacgccatcgtctcgccgcgcttcaggggcaaattctcccgaaacaaaag
cgtcaggcgcagctacaggcagctatcgcgcgtcatcatcaggagcaggcgcaatacacc
caacgtctggcggataagcgtttgagttataagactaaagcgcaggagcttgcggacgtt
cgcactatttgcgagcaggaggcgcgcatcaaagatctggaaagccagcgggcgcactta
cagtccggccagccgtgtccgctttgcggctcgacgacgcaccccgccatcgccgcctat
caggcgctggaactgagcgcgaatcaaacccgccgcgacgcgctggaaaaagaggtcaaa
acgctggcggaagaaggcgcggcgctgcgaggacagttagatgccttaacgcaacaatta
cagcgggatgaaagcgaggcgcagtcgttgttgcaggaggagcaagcgcttactgaggaa
tggcaaacgctatgcgctacgctgggcgttcagctccagccgcaagaagacctcgcgggc
tggctggccgccgcggaagagcatgagcaacagttggatcagctcagccagcgtcatgct
ctacaaacgcaaatcgcggcgcatactgaacaggtagcgcgctttaccgcgcagattgcg
cagcgtcaggcgtcgctgacggctgatttggcgcagtatacactttcccttccagcgcca
gaagacgaagcctcatggctgaatgagcgcgccgacgaagcgaaaatatggcaacagcgt
cagacagagttcgcggatttgcaaacgcagatcgacaggcttgccccgttgctggagacg
ctaccgcaaacggataccgcggattccgacgacgacgtgccgctggataactggcggcag
acgcatgatgagtgcgtgtcattacaaagccagttgcaaaccctgcaggaacagacgacg
caggaacagcagcgcgccgccgaggcgatagcgcactttgatgcggcgttaaaaaatagc
ccgtttgacagccaggcaacgttcctggcggcgttgctggatgaagagaccgtgacccgt
ctggaaaaacaacaacaaacgctggaaagtcagctacaacaagcgaaggcgttaagcgcg
cagtccgcgcaggcgctggctgaccatcagcaacagccacccgccggtctggacccaacg
tgtacggaggagcagctcgcgcagcggctggcgcagttggcgcaacaactgcgcgaaaac
acgacacgccagggggaaatccgccagcaaattaaacaggatgcagataatcggcagcgc
caacgggcgctgatggcggaaatgaagcaaacctctcagcaagtggaagactggggctat
ctcaatgcgctgatcggctctaaagaaggtgataagttccgcaaattcgcccagggactg
acgctggataatctggtctggctggcgaatcatcagctcacccgcctgcatggccgctat
ttattgcagcgcaaagccagcgacgcgctggaactggaggttgtcgatacctggcaggcc
gacgccgtgcgcgatacgcgaacgttatcaggcggcgaaagcttcctggtcagcctggcg
ctggcgctggcgttatcagatttggtcagccataaaacgcgcattgattctttgttcctc
gacgaaggcttcggcacgcttgatagcgaaacgctggacgccgcgctggatgcgctcgac
gcgctgaatgccagcgggaagaccatcggtgtgattagccatgtggaagccatgaaagaa
cgaatccccgtgcagataaaagtgaaaaaaatcaatgggcttggttatagcaaactggac
aaagcgtttgctgtggagtaa
DBGET
integrated database retrieval system
