Staphylococcus aureus subsp. aureus MW2 (CA-MRSA): MW0498
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Entry
MW0498 CDS
T00086
Symbol
rpoC
Name
(GenBank) RNA polymerase beta-prime chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sam
Staphylococcus aureus subsp. aureus MW2 (CA-MRSA)
Pathway
sam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MW0498 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sam03021
]
MW0498 (rpoC)
03400 DNA repair and recombination proteins [BR:
sam03400
]
MW0498 (rpoC)
Enzymes [BR:
sam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MW0498 (rpoC)
Transcription machinery [BR:
sam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MW0498 (rpoC)
DNA repair and recombination proteins [BR:
sam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MW0498 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAB94363
UniProt:
P60286
LinkDB
All DBs
Position
573870..577493
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIKDLLE
EIDLDEELKLLRDELESATGQRLTRAIKRLEVVESFRNSGNKPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNNTNEVLKAYANGFVHLHTRIGVH
ASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQENLERKTPNRYFIDPTT
LGEGGLKEYFENEELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVADIVVLPDKQQILDEHEKLVDRITKQFNRGLITEEERYNAVVEIWTDAKDQIQGEL
MQSLDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITPEIAKKITDAGIEQMYIRSAFTCNARH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRIIVEIGQ
PVQRGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKHRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYEKTAKPVAEVE
SQTEVTE
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaataggattggcttcacctgaaaaaatc
cgttcttggtcttttggtgaagttaaaaaacctgaaacaatcaactaccgtacattaaaa
cctgaaaaagatggtctattctgtgaaaggattttcggacctacaaaagactgggaatgt
agttgtggtaaatacaaacgtgttcgctacaaaggcatggtctgtgacagatgtggagtt
gaagtaactaaatctaaagtacgtcgtgaaagaatgggtcacattgaacttgctgctcca
gtttctcacatttggtatttcaaaggtataccaagccgtatgggattattacttgacatg
tcaccaagagcattagaagaagttatttactttgcttcttatgttgttgtagatccaggt
ccaactggtttagaaaagaaaactttattatctgaagctgaattcagagattattatgat
aaatacccaggtcaattcgttgcaaaaatgggtgcagaaggtattaaagatttacttgaa
gagattgatcttgacgaagaacttaaattgttacgcgatgagttggaatcagctactggt
caaagacttactcgtgcaattaaacgtttagaagttgttgaatcattccgtaattcaggt
aacaaaccttcatggatgattttagatgtacttccaatcatcccaccagaaattcgtcca
atggttcaattagatggtggacgatttgcaacaagtgacttaaacgatttataccgtcgt
gtaattaatcgaaataatcgtttgaaacgtttattagatttaggtgcacctggtatcatc
gttcaaaacgaaaaacgtatgttacaagaagccgttgacgctttaattgataatggtcgt
cgtggtcgtccagttactggcccaggtaaccgtccattaaaatctttatctcatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcagga
cgttcagttattgcagtaggtccaagcttgaaaatgtaccaatgtggtttaccaaaagaa
atggcacttgaactatttaaaccattcgtaatgaaagaattagttcaacgtgaaattgca
actaacattaaaaatgcgaagagtaaaatcgaacgcatggatgatgaagtttgggacgta
ttggaagaagtaattagagaacatcctgtattacttaaccgtgcaccaacacttcataga
cttggtattcaagcatttgaaccaactttagttgaaggtcgtgcgattcgtctacatcca
cttgtaacaacagcttataacgctgactttgacggtgaccaaatggcggttcacgttcct
ttatcaaaagaggcacaagctgaagcaagaatgttgatgttagcagcacaaaacatcttg
aaccctaaagatggtaaacctgtagttacaccatcacaagatatggtacttggtaactat
taccttactttagaaagaaaagatgcagtaaatacaggcgcaatctttaataatacaaat
gaagtattaaaagcatatgcaaatggctttgtacatttacacactagaattggtgtacat
gcaagttcgttcaataatccaacatttactgaagaacaaaacaaaaagattcttgctacg
tcagtaggtaaaattatattcaatgaaatcattccagattcatttgcttatattaatgaa
cctacgcaagaaaacttagaaagaaagacaccaaacagatatttcatcgatcctacaact
ttaggtgaaggtggattaaaagaatactttgaaaatgaagaattaattgaacctttcaac
aaaaaattcttaggtaatattattgcagaagtattcaacagatttagcatcactgataca
tcaatgatgttagaccgtatgaaagacttaggattcaaattctcatctaaagctggtatt
acagtaggtgttgctgatatcgtagtattacctgataagcaacaaatacttgatgagcat
gaaaaattagtcgacagaattacaaaacaattcaaccgtggtttaatcactgaagaagaa
agatataatgcagttgttgaaatttggacagatgcaaaagatcaaattcaaggtgaattg
atgcaatcacttgataaaactaacccaatcttcatgatgagtgattcaggtgcccgtggt
aacgcatctaactttacacagttagcaggtatgcgtggattgatggccgcaccatctggt
aagattatcgaattaccaatcacatcttcattccgtgaaggtttaacagtacttgaatac
ttcatctcaactcacggtgcacgtaaaggtcttgccgatacagcacttaaaacagctgac
tcaggatatcttactcgtcgtcttgttgacgtggcacaagatgttattgttcgtgaagaa
gactgtggtactgatagaggtttattagtttctgatattaaagaaggtacagaaatgatt
gaaccatttatcgaacgtattgaaggtcgttattctaaagaaacaattcgtcatcctgaa
actgatgaaataatcattcgtcctgatgaattaattacacctgaaattgctaagaaaatt
acagatgctggtattgaacaaatgtatattcgctcagcatttacttgtaacgcacgacat
ggtgtttgtgaaaaatgttacggtaaaaaccttgctactggtgaaaaagttgaagttggt
gaagcagttggtacaattgcagcccaatctatcggtgaaccaggtacacagcttacaatg
cgtacattccatacaggtggggtagcaggtagcgatatcacacaaggtcttcctcgtatt
caagagattttcgaagcacgtaaccctaaaggtcaagcggtaattacggaaatcgaaggt
gtcgtagaagatattaaattagcaaaagatagacaacaagaaattgttgttaaaggtgct
aatgaaacaagatcataccttgcttcaggtacttcaagaattattgtagaaatcggtcaa
ccagttcaacgtggtgaagtattaactgaaggttctattgaacctaagaattacttatct
gttgctggattaaacgcgactgaaagctacttattaaaagaagtacaaaaagtttaccgt
atgcaaggtgtagaaatcgacgataaacacgttgaggttatggttcgacaaatgttacgt
aaagttagaattatcgaagcaggtgatacgaagttattaccaggttcattagttgatatt
cataactttacagatgcaaatagagaagcatttaaacaccgtaagcgtcctgcaacagct
aaaccagtattacttggtattactaaagcatcacttgaaacagaaagtttcttatctgca
gcatcattccaagaaacaacaagagttcttacagatgcagcaattaaaggtaagcgtgat
gacttattaggtcttaaagaaaacgtaattattggtaagttaattccagctggtactggt
atgagacgttatagcgacgtaaaatacgaaaaaacagctaaaccagttgcagaagttgaa
tctcaaactgaagtaacggaataa
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