Entry |
|
Symbol |
gyrB
|
Name |
(GenBank) DNA gyrase subunit B
|
KO |
|
Organism |
samb Streptomyces ambofaciens
|
Brite |
KEGG Orthology (KO) [BR:samb00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:samb03032]
SAM23877_3784 (gyrB)
03400 DNA repair and recombination proteins [BR:samb03400]
SAM23877_3784 (gyrB)
Enzymes [BR:samb01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SAM23877_3784 (gyrB)
DNA replication proteins [BR:samb03032]
Prokaryotic type
DNA Topoisomerases
SAM23877_3784 (gyrB)
DNA repair and recombination proteins [BR:samb03400]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAM23877_3784 (gyrB)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
4028759..4030843
|
AA seq |
694 aa
MLCQKGRFVADSGNPNENNPSTDTGVNDAVSTSTGEAPTSYDASAITVLEGLDAVRKRPG
MYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVTILADGGVQVVDNGRGIPVGIVPS
EGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQEY
KLGVPTAPLARHEATEETGTSVTFWADGDIFETTDYSFETLSRRFQEMAFLNKGLKINLT
DERESAKATAGADEAGEDEKHEVKSVSYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAED
KEKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKRLLRE
KDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQRVVYEHLTDWLDRNP
NEAADIIRKGIQAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEG
DSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIE
KLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEY
AYSDRERDALIELGRNAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDA
AQADDLFSVLMGEDVEARRAFIQRNAKDVRFLDI |
NT seq |
2085 nt +upstreamnt +downstreamnt
gtgctgtgccagaaagggcgcttcgtggccgattccggcaaccccaacgagaacaatccg
tccaccgacaccggcgtgaacgacgcggtgagcacctcgaccggcgaggctcccacctcg
tacgacgccagtgccatcaccgtcctcgagggtctggacgcggtccgcaagcgacccggt
atgtacatcggctcgaccggtgaacggggcctgcaccacctggtgcaggaggtcgtggac
aactccgtcgacgaggcgctggccggccacgcggacacgatcgacgtcacgatcctcgcc
gacggcggcgtccaggtcgtcgacaacggccgtggcatcccggtgggcatcgtcccctcc
gagggcaagcccgccgtcgaggtcgtgctgaccgtgctgcacgcgggcggcaagttcggc
ggcggcggttacgcggtctccggtggtctgcacggcgtgggtgtctccgtcgtcaacgcc
ctttccacgcgggtcgccgtggaggtcaggaccgacggctaccgctggacgcaggagtac
aagctgggcgtccccacggcgccgctcgcccggcacgaggccaccgaggagaccggcacg
tcggtcaccttctgggccgacggcgacatcttcgagaccaccgactactccttcgagacg
ctctcccggcgcttccaggagatggccttcctcaacaagggcctgaagatcaacctcacc
gacgagcgcgagtcggcgaaggcgaccgccggtgcggacgaggcgggcgaggacgagaag
cacgaggtcaagagcgtctcgtaccactacgagggcggcatcgtcgacttcgtgaagtac
ctcaactcccgcaagggagagctggtgcaccccaccgtgatcgacctggaggccgaggac
aaggagaagagcctctccctcgaggtcgcgatgcagtggaacggcggctacaccgagggt
gtgtactccttcgccaacatcatccacacgcacgagggcggtacgcacgaagagggcttc
cgcgcggcgctcacctccctgatcaacaagtacgcgcgtgacaagaggctgctgcgggag
aaggacgacaacctcacgggtgacgacatccgcgagggtctgaccgcgatcatctcggtg
aagctgagcgagccgcagttcgagggccagaccaagaccaagctgggcaacacggaggtc
aagaccttcgtccagcgcgtggtctacgagcacctgaccgactggctcgaccgcaacccg
aacgaggccgcggacatcatccgcaagggcatccaggcggccaccgcgcgcgtggcggcc
cgcaaggcccgcgacctgacgcgtcgtaagggcctgctggagacggcgtccctgccgggc
aagctctccgactgccagtcgaacgacccgaccaagtgcgagatcttcatcgtcgagggc
gactccgccggcggctccgccaagtccggccggaacccgcagtaccaggcgatcctcccg
atccgcggcaagatcctcaacgtcgagaaggcgcgcatcgaccgcatcctgcagaaccag
gagatccaggcgatgatctccgcgttcggcacgggtgtgcacgaggacttcgacatcgag
aagctccgctatcacaagatcatcttgatggcggacgccgacgtcgacggccagcacatc
agcaccctgctgctgaccttcctgttccgcttcatgcgaccgctggtcgaggccgggcac
gtgtacctctcccgcccgccgctctacaagatcaagtggggccgggacgacttcgagtac
gcgtactccgaccgcgagcgcgacgccctgatcgagctgggacgcaacgccggcaagcgc
atccgcgaggactccgtgcagcgcttcaagggcctcggcgagatgaacgccgaggagctg
cgcgtcacgaccatggaccaggagcaccgtgtgctcggccaggtcacgctcgacgacgcc
gcgcaggccgacgacctgttctcggtgctgatgggcgaggacgtcgaggcacggcgcgcg
ttcatccagcgcaacgccaaggacgtccgcttcctcgacatctga |