Streptomyces ambofaciens: SAM23877_4967
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Entry
SAM23877_4967 CDS
T04055
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
samb
Streptomyces ambofaciens
Pathway
samb03420
Nucleotide excision repair
samb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAM23877_4967
03430 Mismatch repair
SAM23877_4967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
samb03400
]
SAM23877_4967
Enzymes [BR:
samb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAM23877_4967
DNA repair and recombination proteins [BR:
samb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAM23877_4967
MMR (mismatch excision repair)
Other MMR factors
SAM23877_4967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
AKZ58012
UniProt:
A0A0K2AYW9
LinkDB
All DBs
Position
5266892..5270659
Genome browser
AA seq
1255 aa
AA seq
DB search
MPAHLTDPEQLKELLGIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAGELAERVRKALIKAGVTDPDVIDPDNPPGEPVISTYHAFAGRLL
TDHGLRLGLEPTSRLLADATRYQLAARVLREAPGPYPALTRSFADLVSDLLALDSELAEH
LVRPEELRAWDAGLLESLRSVKLSNADLRKVPEAAAARRELAELVIRYRAAKRERDLLDF
GDQIALSAQLAGLPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFGAGTGHPVTAVGD
PCQAIYGWRGASVANLDDFPEHFAHGDGRPATRQALSQNRRSGGRLLDLANDLAEPLRAM
HAGVEALRPAPGVERDGTVRCALLRTHAEEIDWLADSVAHLVRTGKAPGEIAVLCRTATD
FAGIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIG
PRDLALLGRRARLLVAHARVDGGDDPDRRLAAAVEGVDPSEVISLADALDTFLETPLDGT
GDDDGLPFSSDARVRFARLATELRDLRRALSDPLMDVLHRVLAVTGLEVELSASPHALAA
RRRETLSNFLDVAASFAASDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHK
SKGLEWDVVAVPGLVTGTFPSGQGREKWTAQGKVLPHGLRGDADTLPDVASWDSRGLKAF
HEAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSAFLTALYEHCASGHG
EIEAWADEPAEDEENPALHRATADQAWPLPLDDAALVRRRAAAETVLAHLDALTSQQDGA
PAVTHDPDTYDDPDWPPPPGDDEALQHAEEPVWAEDPTDWDSWTTDRPASPPDEPASPPD
EPASPPGRATAPGGPATAPGGPATPPDGPATPSDGAAAAPGDPTAAPGDPTAAPDDPTAA
PDSTPGTAARPTVPPPSGRPAIPHQAAPPGEAGRAGTPGAHPRAPEPSAPARLTPEEART
VASWDRDLDALTGELLRARESVTEVRLPASLTASQLMDLAADPDGFAQELARPMPRPPQP
AARRGTRFHAWVEARFEPLELPLLEPEELPGSEAEIADERDLEFLKDAFERTEYARRTPY
RVEAPFQLTLAGRIVRGRMDAVYKEGEGATARYEIVDWKTGRAGTADPLQLALYRLAWAE
QQHVPLESVTAAFLFVRTGEVVRPGDLPDRAALENLLLADPVGDEPHDRGVRAGR
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcccatctcacggatcccgaacagctcaaggagctcctcggcatccccttcacc
ccggagcagacggcctgcatcatcgcgccgcccgccccgcaggtgatcgtcgccggcgcc
gggtcgggcaagacgacggtgatggcggcgcgcgtggtgtggctggtcggcaccggccag
gtcgcccccgaacaggtcctcggcctcaccttcaccaacaaggcggccggtgaactcgcc
gaacgcgtacgcaaggcgctgatcaaggccggcgtcaccgatccggacgtgatcgacccg
gacaatccgccgggcgaaccggtgatctccacgtaccacgccttcgcgggccgtctcctg
accgaccacgggctgcgcctcgggctggagccgacctccaggctgctcgccgacgccacc
cgctaccagctcgccgcgcgggtcctgcgcgaggctcccggcccctacccggccctcacc
cgctccttcgccgacctggtcagcgacctcctcgccctcgactcagagctcgccgagcac
ctcgtacgcccggaggagctgcgcgcctgggacgccggactcctggagtccctgcggagc
gtcaagctcagcaacgccgacctgcgcaaggtccccgaggccgccgccgcgcgccgggaa
ctggccgagctggtgatccgctaccgggccgccaaacgcgaacgggacctgctcgacttc
ggcgaccagatcgccctgtccgcacagctcgccgggctcccggaggtgggccgcgtgctg
cgcgacgagttccgtgtcgtactgctcgacgagtaccaggacacctcggtggcccagcgc
gtcctcctggcgggcctgttcggggccggcaccggccaccccgtgaccgccgtgggcgac
ccctgccaggcgatctacggctggcgcggtgcctccgtcgccaacctcgacgacttcccc
gagcatttcgcccacggtgacggccgccccgccacccgccaggcgctcagccagaaccgc
cgcagcggcggccgcctcctcgacctcgccaacgacctcgccgagcccctgcgcgccatg
cacgcgggcgtcgaggccctgcgccccgcccccggcgtcgaacgcgacgggacggtccgc
tgcgccctgctgcgcacccacgccgaggagatcgactggctcgccgactccgtcgcccac
ctcgtgcgcaccggcaaggcgcccggcgagatcgccgtgctgtgccgtacggcgaccgac
ttcgccgggatccagggcgcgctggtcgcccgcgacgtccccgtcgaggtcgtgggcctc
tccggtctgctgcacctgcccgaggtggccgacctggtcgccgtctgcgaagtcctccag
gaccccggcgccaacgcctccctggtccgcctgctcaccggtccccgctggcggatcggg
ccgcgcgacctcgccctcctcggacgacgggcccggctgctcgtcgcccacgcgcgcgtg
gacggcggcgacgaccccgaccggaggctcgccgcggccgtcgagggggtcgacccgtcc
gaggtgatatcgctcgcggacgccctcgacaccttcctggagacgcccctggacggcacc
ggggacgacgacgggctgcccttctcgtcggacgcgcgggtgcggttcgcacggctggcc
accgaactgcgcgacctgcgccgggccctgtccgaccccctcatggacgtgctgcaccgc
gtcctcgccgtcaccggcctggaggtcgagctgtcggcgtccccgcacgccctggcagcc
cgccgccgcgagaccctgtcgaacttcctggacgtcgccgcctccttcgccgcgagcgac
ggcgaggccaccctcctcgcctttctcggcttcctgcgcaccgccgcccagtacgagaag
ggcctcgacaacgccctgcccggcggcgagaacaccgtcaaggtgcttaccgcgcacaag
tcgaaggggctggagtgggacgtcgtcgccgtgcccggtctggtcaccggcaccttcccc
agcggccagggccgcgagaagtggaccgcccagggcaaggtcctgccgcacggcctgcgc
ggtgacgccgacaccctgcccgacgtggcctcctgggactcgcgcggtctcaaggccttc
cacgaggcgatgaaggaacaccagcacaccgaggagctccgcctcggctacgtcaccttc
acccgcccccggtccctgctgctgggctccggccactggtggggtcccagccagaagaag
ccccgcggaccgtccgctttcctcacggccctgtacgaacactgcgcctccggacacggt
gagatcgaggcctgggcggacgaacccgccgaggacgaggagaacccggccctgcaccgg
gcgaccgccgaccaggcctggcccctgcccctggacgacgcggccctcgtccgccgccgg
gccgccgccgagacggtcctcgcccacctggacgccctcacctcccagcaggacggcgcc
cccgcggtcacgcacgaccccgacacctacgacgacccggactggccgccaccccccggc
gacgacgaagcactccagcacgcggaggaaccggtctgggccgaagaccccacggactgg
gactcctggaccacggaccgccccgcctcaccgccggacgagcccgcctcaccgccggac
gagcccgcctcaccgccgggccgtgccaccgcgccgggcggccccgccaccgcgccgggc
ggccccgccaccccgccggacggccccgccaccccgtcggacggcgccgccgcggcgccc
ggcgaccccactgcggcgcccggcgaccccactgcggcgcccgacgaccccaccgcggcg
cccgacagcacccccggcaccgcggctcgccccaccgtgccgccgccgtccggacgcccc
gccatcccgcaccaggcggcccctcccggcgaggcaggccgcgccggaacgcccggcgcc
cacccccgggcgccggagccctccgctcccgcccgcctcacgccggaggaagcccgcacc
gtcgcctcctgggaccgcgacctcgacgcgctcaccggtgagctcctgcgcgctcgcgag
agcgtcaccgaggtgcgtctcccggcgtcgctgaccgcctcccagctgatggacctggcc
gccgacccggacggcttcgcgcaggagctggcccgccccatgccccgcccgccccagccg
gccgcccgccgcggcacccgcttccacgcctgggtcgaggcccgcttcgaaccgctggag
ctccccctgctggaacccgaggagctgcccggaagcgaggccgagatcgccgacgaacgc
gacctggagttcctcaaggacgccttcgaacgcaccgagtacgcccgccggaccccctat
cgcgtcgaggccccgttccagctcacgctcgccggccgcatcgtgcgaggccgcatggac
gccgtctacaaggagggcgaaggggcgacggcgaggtacgagatcgtcgactggaagacc
ggccgtgccggtaccgcggaccccctccagctcgcgctgtaccgcctcgcctgggccgag
cagcagcacgtaccgctggagtcggtgacggccgccttcctgttcgtacgcacgggcgag
gtcgtccggcccggcgacctgcccgaccgcgccgcgctggagaacctgctgctggccgac
ccggtcggtgacgaaccgcacgatcggggtgtccgtgcgggccgatag
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