Streptomyces ambofaciens: SAM23877_5746
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Entry
SAM23877_5746 CDS
T04055
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
samb
Streptomyces ambofaciens
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
samb03016
]
SAM23877_5746
Enzymes [BR:
samb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SAM23877_5746
Transfer RNA biogenesis [BR:
samb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAM23877_5746
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF1512_C
Motif
Other DBs
NCBI-ProteinID:
AKZ58791
UniProt:
A0A0K2B0W8
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All DBs
Position
complement(6226543..6227748)
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AA seq
401 aa
AA seq
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MTQAPTPLLEPREGVPPVIADASALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQL
RREGAGSALIDPVACPDLSGLGTALSDVEWVLHAATQDLPCLREIGMVPTRIFDTELAGR
LAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKE
LDRQGKLEWARQEFDAIASAPPAEPRKDPWRRTSGMHKVRRRRQLAVVRELWQTRDRIAQ
RRDVSPGKVLGDAAIVEAALALPPNAHALAALNGFGRVNRRQLEQWQVAVDRARGLSESQ
LPQPGQPVTGPPPPRAWADKDPAAAARLSAARAAVTALAERLNMPQENLITPDTVRRVCW
EPPATVDAESVGAALAGHGARPWQVEQVTPALVAALGEGVS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaggcgccgacccctttgctcgaaccgcgcgagggcgttccgccggtgatcgcc
gacgcgtccgccctcgccgaggtgaccgccgccttcgccgcggggagcggtcccgtcgcc
gtcgacgccgagcgcgcctccggctaccgctacggccagcgcgcgtacctcgtgcagctg
cgccgcgagggcgccggctccgcactgatcgatccggtggcctgcccggacctgtcgggg
ctgggcaccgcgctctccgacgtggagtgggtgctgcacgcggccacccaggacctgccg
tgcctgcgtgaaatagggatggtgcccacccggatcttcgacaccgagctggccgggcgg
ctcgccggcttcccgcgggtcgggctcggcgcgatggtggagaacgtcctgggcttcgtc
ctggagaagggccactcggcggtcgactggtccacgcgcccgctgcccgagccctggctg
cgctacgccgcgctcgacgtcgagctcctcgtcgacctgcgcgacgcgctggagaaggag
ctggaccggcaggggaagctggagtgggcccggcaggagttcgacgcgatcgcgtcggcc
ccgccggccgagccccgcaaggacccctggcgccgtacctccggcatgcacaaggtgcgc
cggcgccgtcagctggccgtggtgcgggagctgtggcagacccgggaccgcatcgcgcag
cgccgcgacgtctcccccggcaaggtgctcggggacgcggccatcgtcgaggccgcgctc
gcgctcccgcccaacgcgcacgcgctcgccgcgctgaacggcttcggacgggtcaaccgc
cggcagctggagcagtggcaggtcgcggtcgaccgggccagggggctgtccgagtcgcag
ctgccgcagcccggccagccggtgaccggtcccccgcccccgcgggcgtgggccgacaag
gaccccgccgccgcggcccggctgtccgccgcacgggcggcggtgacggcgctcgccgag
cggctgaacatgccgcaggagaacctgatcacgccggacaccgtgcgccgggtctgctgg
gagcccccggcgacggtcgacgccgagtccgtgggcgcggccctcgcggggcacggagcc
cgtccctggcaggtggagcaggtgacgcccgccctggtggcggcgctcggcgagggcgtg
tcgtag
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