Streptomyces ambofaciens: SAM23877_5865
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Entry
SAM23877_5865 CDS
T04055
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
samb
Streptomyces ambofaciens
Pathway
samb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAM23877_5865 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
samb03000
]
SAM23877_5865 (alkA)
03400 DNA repair and recombination proteins [BR:
samb03400
]
SAM23877_5865 (alkA)
Enzymes [BR:
samb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SAM23877_5865 (alkA)
Transcription factors [BR:
samb03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SAM23877_5865 (alkA)
DNA repair and recombination proteins [BR:
samb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAM23877_5865 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AKZ58910
UniProt:
A0A0K2B0K3
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All DBs
Position
6350693..6352123
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AA seq
476 aa
AA seq
DB search
MTQNVTERAEHAQHEDSRYEAVRSRDARFDGAFFFAVETTGIYCRPSCPAVTPKRRNVRF
FATAAAAQGSGFRACRRCRPDAVPGSADWNVRADVVGRAVRLIGDGVVDREGVAGLAGRL
GYSARQVQRQLTAELGAGPVALARAQRAHTARVLLQTTGLPVTEIAFASGFASVRQFNDT
IRAVFAATPSALRAAAPARDRPARRDATPSAGIPLRLAHRGPYQHGPVFDLLGHEAVAGV
EEVSGPPGRRVYRRTLRLPYGTGIVAVDERPGGPRTGPGGWLEARLHLTDLRDLTTAVQR
LRRLFDLDADPYAVDERLAADPRLAPLVAARPGLRSPGTADPGELAVRAVAGRARSERLV
RRYGKALDAPCGTLTHLFPEPAVLAAAEPAGTLGALAAALADGAVRLDPGADRDEAERAL
LAVPGVDARTAAVVRTRALGDPDVAPPDAAVPETWRPWRSYALNHLRAAGEWEQHR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcagaacgtgacggagcgcgcggagcacgcgcagcacgaggacagcaggtacgag
gccgtccgcagccgggacgcccggttcgacggcgcgttcttcttcgcggtcgagaccacc
ggcatctactgccggcccagctgcccggcggtcaccccgaagcggcgcaacgtgcgcttc
ttcgcgacggccgccgcggcccagggctcgggcttccgggcctgccggcggtgccgcccg
gacgccgtaccgggctcggcggactggaacgtccgcgccgacgtcgtcggccgggccgtg
cggctgatcggcgacggcgtcgtcgaccgcgagggcgtcgccggactcgccggccggctc
ggctacagcgcccgccaggtccagcggcagctcaccgccgagctcggcgccgggcccgtg
gccctggcccgcgcccagcgggcgcacaccgcgcgcgtcctgttgcagaccaccggcctg
cccgtcaccgagatcgcgttcgcctccgggttcgccagcgtccggcagttcaacgacacg
atcagggccgtgttcgcggccaccccgagcgcgctgcgcgccgccgccccggcccgggac
cggcccgcccggcgcgacgccaccccctccgccggcatccccctgaggctcgcccaccgg
ggcccctaccagcacgggcccgtcttcgacctgctcgggcacgaggccgtggccggggtc
gaggaggtgagcggcccgcccggccgacgcgtgtaccggcgcaccctgcgcctgccgtac
ggcaccgggatcgtcgccgtcgacgaacggccgggcgggccgcgcaccggccccggcggc
tggctggaggcccgtctccacctcaccgacctccgcgacctgaccaccgccgtgcagcgg
ctgcgccggctcttcgacctcgacgccgacccctacgccgtggacgaacggctcgccgcc
gacccccggctcgcgcccctcgtcgccgcccgccccgggctgcgctcacccggtaccgcc
gaccccggtgaactcgcggtgcgggccgtggccggacgggcgcggtccgagcgcctggtc
cggcggtacggcaaggccctggacgcgccgtgcggcaccctgacccacctcttccccgaa
ccggccgtcctcgccgccgccgagcccgccggcaccctgggcgcgctcgccgcggcgctc
gccgacggcgcggtacgcctggaccccggcgccgaccgggacgaggccgaacgggcgctg
ctcgccgtgcccggcgtggacgcccgcacggccgccgtcgtccgcacccgcgccctcggc
gaccccgacgtcgccccgcccgacgccgctgtgcccgagacctggcgcccctggcgctcg
tacgcactgaaccacctgcgcgcagcaggagagtgggagcagcaccgatga
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