| Entry |
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| Symbol |
alkA
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| Name |
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
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| KO |
| K13529 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] |
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| Organism |
samb Streptomyces ambofaciens
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:samb00001]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAM23877_6055 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:samb03000]
SAM23877_6055 (alkA)
03400 DNA repair and recombination proteins [BR:samb03400]
SAM23877_6055 (alkA)
Enzymes [BR:samb01000]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SAM23877_6055 (alkA)
Transcription factors [BR:samb03000]
Prokaryotic type
Helix-turn-helix
AraC family
SAM23877_6055 (alkA)
DNA repair and recombination proteins [BR:samb03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAM23877_6055 (alkA)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6559453..6560949
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| AA seq |
498 aa
MQTGMHTDTERCVRAVRSKDARFDGWFFTAVLTTRIYCRPSCPVVPPKPENMTFHPSAAA
CQQAGFRACKRCRPDTSPGSPEWNLRADLTARAMRLIADGVVDREGVPGLAARLGYSTRQ
VERQLLAELGAGPLALARAQRAQTARLLIETTPLSMADVAFAAGFSSVRTFNDTVREVFA
LSPSELRTRVPKSRPAPATRGAAPGTLSLRLPFRTPLHPDNLFGHLAATAVPGVEEWREG
AYRRTLRLPYGHGIVALTPHPDHIACRLTLGDLRDLTVAISRCRRLLDLDADPTAVDDQL
RADPLLAPLVDKAPGRRVPRTVDEAEFAVRAVLGQQVSTAAARTHAARLVTAHGVPVDDP
EGGLTHLFPSPEALAEVDPQTLAMPRTRRTTLTSLVSRLADGSLGLGVETDWAETRARLL
ALPGFGPWTADVIAMRALGDPDAFLPTDLGVRRAAGELGLPSTPAALTARAAAWRPWRAY
AVQYLWATDSHPINVLPV |
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| NT seq |
1497 nt +upstreamnt +downstreamnt
atgcagacgggaatgcacaccgacaccgagcgctgcgtccgcgccgtgcggtcgaaggac
gcacggttcgacggctggttcttcacggccgtcctgacgacccgcatctactgccggccc
agctgcccggtggtgccgcccaagcccgagaacatgaccttccacccgagcgcggcggcc
tgtcagcaggccggcttccgggcgtgcaaacgctgccgcccggacaccagccccggctcc
ccggagtggaacctgcgcgccgacctcaccgcccgcgccatgcggctgatcgccgacggc
gtcgtggaccgcgagggcgtccccggcctcgccgcccggctcggctacagcacccggcag
gtcgaacgccagctcctggccgagctgggcgccggacccctcgcgctcgcccgcgcgcag
cgcgcccagaccgcccggctgctcatcgagacgaccccgctgtcgatggcggacgtcgcc
ttcgcggccggcttctcctccgtccgcaccttcaacgacacggtccgcgaggtcttcgcg
ctctccccgagcgagctgcgcacccgcgtcccgaagagccgcccggcccccgccacccgg
ggcgccgcccccggcacgctctccctccgcctcccgttccgcaccccgctccaccccgac
aacctcttcgggcacctcgccgccaccgccgtacccggcgtggaggagtggcgggagggc
gcgtaccgccgcaccctgcgcctcccgtacggtcacggcatcgtggccctcaccccccac
cccgaccacatcgcctgccgcctcaccctcggcgacctgcgcgacctgaccgtcgcgatc
agccgctgccgtcgcctgctcgacctggacgccgacccgacggccgtcgacgaccagctg
cgcgccgacccgctgctcgcgccgctggtcgacaaggcgcccggccggcgcgtgccgcgc
acggtcgacgaggcggagttcgccgtacgggccgtgctcggccagcaggtctccaccgcc
gccgcccgcacccacgccgcccgcctggtcacggcacacggcgtcccggtcgacgacccc
gagggcggcctgacccacctcttcccgtcaccggaggcactggcggaggtggacccgcag
accctggcgatgccccgcacccgccgcacgaccctgacctccctcgtctcccgcctggcc
gacggctcactcggcctcggcgtcgagaccgactgggccgagacccgggcccggctcctc
gccctccccggcttcggcccctggacggccgacgtcatcgccatgcgcgccctcggcgac
cccgacgccttcctccccaccgacctcggcgtccgccgcgccgccggggagctgggcctg
ccctccacaccggcggcgctcaccgcccgcgcggcggcctggcgaccctggcgggcgtac
gccgtccagtacctgtgggcgaccgacagccacccgatcaacgtcctgcccgtgtga |
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