Streptomyces ambofaciens: SAM23877_6055
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Entry
SAM23877_6055 CDS
T04055
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
samb
Streptomyces ambofaciens
Pathway
samb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAM23877_6055 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
samb03000
]
SAM23877_6055 (alkA)
03400 DNA repair and recombination proteins [BR:
samb03400
]
SAM23877_6055 (alkA)
Enzymes [BR:
samb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SAM23877_6055 (alkA)
Transcription factors [BR:
samb03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SAM23877_6055 (alkA)
DNA repair and recombination proteins [BR:
samb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAM23877_6055 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AKZ59100
UniProt:
A0A0K2B161
LinkDB
All DBs
Position
6559453..6560949
Genome browser
AA seq
498 aa
AA seq
DB search
MQTGMHTDTERCVRAVRSKDARFDGWFFTAVLTTRIYCRPSCPVVPPKPENMTFHPSAAA
CQQAGFRACKRCRPDTSPGSPEWNLRADLTARAMRLIADGVVDREGVPGLAARLGYSTRQ
VERQLLAELGAGPLALARAQRAQTARLLIETTPLSMADVAFAAGFSSVRTFNDTVREVFA
LSPSELRTRVPKSRPAPATRGAAPGTLSLRLPFRTPLHPDNLFGHLAATAVPGVEEWREG
AYRRTLRLPYGHGIVALTPHPDHIACRLTLGDLRDLTVAISRCRRLLDLDADPTAVDDQL
RADPLLAPLVDKAPGRRVPRTVDEAEFAVRAVLGQQVSTAAARTHAARLVTAHGVPVDDP
EGGLTHLFPSPEALAEVDPQTLAMPRTRRTTLTSLVSRLADGSLGLGVETDWAETRARLL
ALPGFGPWTADVIAMRALGDPDAFLPTDLGVRRAAGELGLPSTPAALTARAAAWRPWRAY
AVQYLWATDSHPINVLPV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgggaatgcacaccgacaccgagcgctgcgtccgcgccgtgcggtcgaaggac
gcacggttcgacggctggttcttcacggccgtcctgacgacccgcatctactgccggccc
agctgcccggtggtgccgcccaagcccgagaacatgaccttccacccgagcgcggcggcc
tgtcagcaggccggcttccgggcgtgcaaacgctgccgcccggacaccagccccggctcc
ccggagtggaacctgcgcgccgacctcaccgcccgcgccatgcggctgatcgccgacggc
gtcgtggaccgcgagggcgtccccggcctcgccgcccggctcggctacagcacccggcag
gtcgaacgccagctcctggccgagctgggcgccggacccctcgcgctcgcccgcgcgcag
cgcgcccagaccgcccggctgctcatcgagacgaccccgctgtcgatggcggacgtcgcc
ttcgcggccggcttctcctccgtccgcaccttcaacgacacggtccgcgaggtcttcgcg
ctctccccgagcgagctgcgcacccgcgtcccgaagagccgcccggcccccgccacccgg
ggcgccgcccccggcacgctctccctccgcctcccgttccgcaccccgctccaccccgac
aacctcttcgggcacctcgccgccaccgccgtacccggcgtggaggagtggcgggagggc
gcgtaccgccgcaccctgcgcctcccgtacggtcacggcatcgtggccctcaccccccac
cccgaccacatcgcctgccgcctcaccctcggcgacctgcgcgacctgaccgtcgcgatc
agccgctgccgtcgcctgctcgacctggacgccgacccgacggccgtcgacgaccagctg
cgcgccgacccgctgctcgcgccgctggtcgacaaggcgcccggccggcgcgtgccgcgc
acggtcgacgaggcggagttcgccgtacgggccgtgctcggccagcaggtctccaccgcc
gccgcccgcacccacgccgcccgcctggtcacggcacacggcgtcccggtcgacgacccc
gagggcggcctgacccacctcttcccgtcaccggaggcactggcggaggtggacccgcag
accctggcgatgccccgcacccgccgcacgaccctgacctccctcgtctcccgcctggcc
gacggctcactcggcctcggcgtcgagaccgactgggccgagacccgggcccggctcctc
gccctccccggcttcggcccctggacggccgacgtcatcgccatgcgcgccctcggcgac
cccgacgccttcctccccaccgacctcggcgtccgccgcgccgccggggagctgggcctg
ccctccacaccggcggcgctcaccgcccgcgcggcggcctggcgaccctggcgggcgtac
gccgtccagtacctgtgggcgaccgacagccacccgatcaacgtcctgcccgtgtga
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