Sinorhizobium americanum: SAMCFNEI73_Ch1470
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Entry
SAMCFNEI73_Ch1470 CDS
T04621
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
same
Sinorhizobium americanum
Pathway
same03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
same00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMCFNEI73_Ch1470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
same03021
]
SAMCFNEI73_Ch1470 (rpoB)
03400 DNA repair and recombination proteins [BR:
same03400
]
SAMCFNEI73_Ch1470 (rpoB)
Enzymes [BR:
same01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMCFNEI73_Ch1470 (rpoB)
Transcription machinery [BR:
same03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMCFNEI73_Ch1470 (rpoB)
DNA repair and recombination proteins [BR:
same03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMCFNEI73_Ch1470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
APG90772
UniProt:
A0A1L3LKY9
LinkDB
All DBs
Position
1485509..1489651
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK
SVFPIKDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR
DGDGWRVPFQPDALKGQKTLADMIDADTGEVVVEAGKKLTPRLLRQLQEKGLKALKATDD
DLYGNYLAEDVVNLGTGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRNT
LTADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLD
LDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTGDVVYLSAMEEAKYHVAQANSVLNDDNSFAEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMESVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDLVNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYARLIDMLRGHVAVAGPKGFKKGTELSNAVVSEYPRSQWW
MFAVEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGAMLEAYHESGDIKPLRQTIDDVIGSGPKGEPIKQYDDESIVRLAEQTRR
GVSIATPVFDGAVEADVNEMLEKAGLKVTGQSTLYDGRTGDAFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDVGTAAQLPDAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgtaggcgcgtacgcaagttttttggaaagatc
cccgaagtcgcagagatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttc
ctcatggtcgaagagcccgcaggcgggcgtcccgacgagggacttcaagctgttttcaag
tcggtatttccgatcaaggatttttcgggcgcttcgatgctcgaattcgtgtcctacgaa
ttcgaaccgccgaagttcgacgtcgaggaatgccgccagcgcgacctgacctatgcggca
ccgctcaaggtgaccctgcgcctgatcgtgttcgatatcgacgaggataccggcgcgaag
tcgatcaaggacatcaaggaacagaacgtctacatgggcgacatgccgctcatgacggac
aacggtaccttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgtcttcttcgatcatgacaagggcaagagccattcctccggcaagctgctgttc
gccgcgcgcgtcattccgtatcgtggttcgtggctcgacatcgaattcgacgccaaggac
atcgtccacgcccgtatcgaccgccgccgcaagattccggtgacgtcgctgctgatggcg
ctcggcatggacggcgaggaaatcctcgacacgttctacacgaagtcgctctaccagcgc
gatggcgatggctggcgtgtgccgttccagccggatgcgctgaagggccagaagacgctc
gccgacatgatcgatgccgacaccggcgaagtggtcgtcgaggccggcaagaagttgacg
ccgcggttgctgcgtcagctgcaggaaaagggcctgaaggcgctgaaggcgaccgatgac
gacctttacggcaactaccttgccgaggacgtcgtcaacctcggaaccggcgaaatctac
ttggaagccggcgacgagatcgacgagaagacgctgccggtcattctatcggccggcttc
gacgagatcccggtccttgacatcgaccatatcaatgtcggcgcctatatccgcaatacc
ctgaccgccgacaagaacgagaaccgtcaggacgctctgttcgacatctatcgcgtcatg
cgtccgggcgagccgccgaccatggattcggccgaagccatgttcaacgcgctgttcttc
gacgccgagcgctacgacctctcggccgtcggccgcgtcaagatgaacatgcgtctcgac
ctcgacgtgccggatacggtccgtacgctccgcaaggaagacatcctggcggtcgtcaag
atgctggtcgaattgcgtgacggcaagggcgagatcgacgacatcgacaacctcggcaat
cgccgcgtccgctcggtcggcgaactgatggagaaccagtatcgcctgggtctcctgcgc
atggagcgcgcgatcaaggagcgcatgtcgtcgatcgagatcgacaccgtcatgccgcag
gatctgatcaacgcgaagcccgccgccgccgccgttcgcgaattcttcggctcctcgcag
ctgtcgcagttcatggaccaagtgaaccccctgtctgaaatcacccacaagcgccgcctt
tcggctcttggcccgggtggtctgacgcgcgagcgcgccggcttcgaagttcgcgacgtg
catccgacccattacggccgcatctgcccgatcgagacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcgacctttgcccgcgtcaacaagtacggcttcatcgagagcccg
taccgcaagatcgtcgacggcaaggtgaccggggacgtggtctatctgtcggcgatggaa
gaggcgaagtatcacgtcgcacaggccaactcggtgctgaacgacgacaactccttcgcg
gaagaattcgtcgtctgccgtcacgccggcgaagttatgctggcgccgcgcgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgccgcggcgctcattccgttc
ctcgagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggctgtg
ccgttgctgagagccgaggcgccgttcgtcggtaccggtatggaatcggtcgttgcgcgt
gattccggtgctgcgattgccgcccgccgtggcggcgtcgtcgaccaggtcgatgcgacg
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtcgggcgtcgatatctac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtc
accgtcggtgacttggtcaacaagggcgacatcattgccgacggcccgtcgacggatctc
ggcgatctggcgctcggccgcaacgcgctcgtcgccttcatgccctggaacggctacaac
tacgaagactcgatcctgctctccgagcggatcgtgcgcgatgacgtgttcacctcgatc
catatcgaggaatttgaggtcatggcacgcgacaccaagctcggtccggaagaaatcacg
cgcgacatcccgaacgtttcggaagaagcgctgaagaaccttgacgaagccggcatcgtc
tatatcggcgccgaagttcagccgggcgacatcctggtcggcaagatcacgccgaagggt
gaaagcccgatgacgccggaagagaagcttctgcgcgccatcttcggcgaaaaggcgtcg
gacgtccgcgatacgtcgatgcgcatgccgccgggcaccttcggtacgatcgtcgaagtt
cgcgtcttcaaccgccacggcgtggagaaggacgagcgcgccatggcgatcgaacgcgag
gagatcgaacgcctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacgtc
tatgcgcgcctgatcgatatgctgcgcggtcacgttgccgttgccggcccgaagggcttc
aagaagggcaccgagctttcgaatgccgtcgtcagcgaatatccgcgctcgcagtggtgg
atgttcgccgtcgaagacgagaaggctcagggcgagatcgaagcgcttcgcgcccagtac
gacgaatccaagtcgcgcctcgaacagcgcttcatggacaaggtcgagaaggtccagcgc
ggcgacgagatgcccccgggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgc
aagatccagccgggcgacaagatggccggccgtcacggcaacaagggcgtcgtgtcgcgg
atcgtaccgatcgaagacatgccgttcctcgaagacggcacccatgtcgacgtggtgttg
aacccgctcggcgtgccgtcgcgcatgaatgtcggtcagatcctcgagacgcatctgggc
tgggcttgcgccggcatgggcaagaagatcggcgcaatgctcgaggcctaccacgagagt
ggcgacatcaagccgctgcgtcagacgatcgacgacgtcatcggatcaggtccgaagggc
gagccgatcaagcagtacgatgatgaatcgatcgtccgcttggccgagcagacccgccgc
ggcgtttcgatcgcgacgccggtcttcgacggcgcggtcgaggccgacgtcaacgagatg
ttggaaaaggccggcctgaaggtgacgggccaatcgacgctctatgacggacgtaccggt
gacgcgttcgaccgtcaggtgacggtaggctacatctacatgctgaagctcaaccacctc
gtcgacgacaagatccacgcccgttcgatcggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaggtctgggcgctc
gaagcctacggcgccgcctacacgctgcaggaaatgctgaccgtcaagtcggacgacgtg
gccggccgcaccaaggtctacgaggcgatcgtccgaggcgacgatacgttcgaggcgggc
attccggagagcttcaacgttctcgtcaaggaaatgcgctcgctcggcctgtcggtggag
ttggaaaactccaaggtcgacgatgtcggcactgcggcgcagctgccggacgcggcggag
taa
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integrated database retrieval system
