Sinorhizobium americanum: SAMCFNEI73_Ch1471
Help
Entry
SAMCFNEI73_Ch1471 CDS
T04621
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
same
Sinorhizobium americanum
Pathway
same03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
same00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMCFNEI73_Ch1471 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
same03021
]
SAMCFNEI73_Ch1471 (rpoC)
03400 DNA repair and recombination proteins [BR:
same03400
]
SAMCFNEI73_Ch1471 (rpoC)
Enzymes [BR:
same01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMCFNEI73_Ch1471 (rpoC)
Transcription machinery [BR:
same03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMCFNEI73_Ch1471 (rpoC)
DNA repair and recombination proteins [BR:
same03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMCFNEI73_Ch1471 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
APG90773
UniProt:
A0A1L3LL64
LinkDB
All DBs
Position
1489838..1494043
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAEMAETSSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
TKAVTLHAKIRGRYKSIDAEGNPVSKIYETTPGRMIIGELLPKNPNVPFEICNQEMTKKN
ISKMIDAVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDNGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHVDCGTDKGLTMTAIVDAGQVVASLGQRILGRTA
LDNIDNPVTGERIVDAGKMILEADVAVIEKAGIQSVRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGVLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRFAEWDPYTR
PMMTEVEGTVHFEDVVDGISVLESTDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGS
ITKLSRGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRVLIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSSYIVGDNVDRIELEDVNDALLAEGKKPAYGDPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRKG
TGADAATPMLADMANENAAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaccttcgattcc
atccggatttcgatcgcgtcgccggagaagattctttcctggtcttacggtgagatcaag
aagccggagacgatcaactaccgcaccttcaagcccgagcgcgacggtctgttctgcgcg
cgcatcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtgacgttatcgcgcgttcgccgc
gagcgcatgggccatatcgagctcgccgcgcccgttgcccacatctggttcctgaagtcg
ctgccgagccgcattgcgacgctgctcgacatgacgctgaaggatatcgagcgcgtcctc
tatttcgaaaactacatcgtcaccgaacctggcctgacgtcgctgaaggagaaccaactc
ctcagcgaagaagagtacatgatcgccgtcgacgagttcggcgaagaccagttcaccgcg
atgatcggtgccgaagcgatctacgagatgctcgcctcgatgaatctcgagaagatcgcc
ggtgatctgcgcgccgaaatggccgagacgagctcggatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggagtccggcaaccgtccggagtggatgatc
atgaaggtcgttccggtgatcccgccggacctgcgtccactcgtgccgcttgacggcggc
cgtttcgcgacctcggacctgaacgacctctaccgccgcgtgatcaaccgtaacaaccgt
ctgaagcggttgattgaactgcgcgcgccgggcatcatcatacgcaacgaaaagcgcatg
ctgcaggaatccgtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcaccggt
gccaacaagcgtccgctgaagtcgctctctgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctacgcccgcctcgacgccaagggcttctcctcgaccgtcaagcaggcgaag
aagcttgtggaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggtgctcctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgag
ccgatcctagtcgaaggcaaggcgatccagttgcacccgctcgtctgcaccgccttcaac
gccgacttcgatggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctt
gaagcccgcgtgctgatgatgtcgacgaacaacatcctgcatccggcaaacggcgcaccg
atcatcgttccgtcgcaagacatggttctcggcctctactatctgtcgatcatgaaccag
aacgagccgggtgaaggcatggccttctccgacatgggcgaactgcaccatgcgctggag
accaaggccgtcaccctgcacgccaagattcgcggccgctacaagagcatcgacgccgag
ggcaacccggtctcgaagatctatgagacgacgcccggtcgcatgatcatcggcgaactc
ctgccgaagaacccgaatgttccgttcgagatctgcaaccaggagatgaccaagaagaac
atctccaagatgatcgacgcggtctatcgccactgcggtcagaaggacacggtgatcttc
tgcgaccggatcatgcagctcggcttctcgcatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtgatcccggacaccaaggtgaagatcgtcggcgacacggaagcgctc
gtgaaggaatacgagcagcagtacaatgacggcctgattacccagggcgaaaagtacaac
aaggtcgtcgacgcctggggcaaggcaaccgaaaaggttgccgaagagatgatggcgcgc
atcaaggcggtcgaatttgacgacaatggccgccagaagccgatgaactcgatctacatg
atgtcgcactcgggtgctcgtggttcgccgaaccagatgcgccagctgggcggcatgcgc
ggcctcatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacgcacggtgcccgtaagggtctggcg
gacaccgccttgaagaccgcgaactccggttacctgacccgccgtctcgtcgacgtcgcg
caggactgcatcgtcacgcatgtcgattgcggcaccgacaagggcctgaccatgacggcg
atcgtcgatgccggtcaggtcgtcgcctccctcggccagcgtatcctcggacgtacggcg
ctcgacaacatcgacaatccggtcaccggcgaacgcatcgtcgacgccggcaagatgatc
ctcgaggccgacgtcgccgtgatcgaaaaggccggcatccagtccgtccgtattcgttcg
gcgctgacctgcgagatccagaccggcgtctgcggcgtctgctacggccgtgacctggcc
cgcggtacgcccgtcaacatgggtgaagcggtcggtgtcatcgcggcgcagtcgatcggt
gagccgggcacgcagctgaccatgcgtaccttccacctcggcggtacggcgaccgtggtt
gaccagtcgttcctggaagcgtcttacgaaggtacggtccagatcaagaaccgcaacatg
ctgcgcaactccgatggcgtactggtcgcgatgggccgcaacatggcgatccagatcctc
gacgaacgcggtgtcgagcgctcctcgcagcgcgtcgcctatggttcgaagatcttcgtc
gacgacggcgacaaggtgaagcgcggccagcgtttcgccgagtgggacccctacacccgt
ccgatgatgacggaagtggaaggtaccgttcacttcgaagacgtcgtcgacggcatctcg
gttctggaatccacggacgaatcgaccggcatcaccaagcgccaggtcatcgactggcgt
tcgacgccgcgcggcacggacctgaagccggcgatcgtcatcaaggacaagaacggcagc
attaccaagctgtcccgcggcggcgaggcccgcttcatgctctcggtcgatgcgatcctt
tcggtcgagccggggcagaaggtcagccagggcgacgttcttgcccgttcgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaggca
cgccgtccgaaggaccacgccatcatcgccgagatcgatggtacggttcgcttcggccgc
gactacaagaacaagcgtcgcgtgctgatcgagccggcggaagacggcgtcgaaccagtc
gagtacctgatcccgaagggcaagcccttccatcttcaggacggcgactacatcgagaag
ggcgactacatcctcgacggcaacccggcgccgcatgacatcctggcgatcaagggcgtg
gaggcgcttgcgtcctacctcgtcaacgagatccaggaagtctatcgtctgcagggcgtt
gtcatcaacgacaagcacatcgaggtgatcgtccggcagatgctgcaaaaggtggaaatc
accgacgccggtgactcaagctacatcgtcggcgacaacgtcgatcgcatcgagcttgag
gacgtcaacgacgcgctgcttgccgaaggcaagaagcctgcctacggcgatccggttctc
ctcggcatcaccaaggcctcgctgcagacgccgtccttcatttcggccgcatcgttccag
gaaaccaccaaggtgcttacggaagccgcggttgccggcaagacggacggcctgcagggt
ctcaaggaaaacgtcatcgtcggtcgcctcatcccggccggcaccggtggcacgatgacg
cagatccgccgcatcgccacggcgcgcgacgagttgattctcgaagagcgccgcaagggt
acgggtgcggatgccgcgacgccgatgctcgccgacatggcgaacgaaaacgctgcggcc
gaatga
DBGET
integrated database retrieval system
