Sinorhizobium americanum: SAMCFNEI73_Ch2608
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Entry
SAMCFNEI73_Ch2608 CDS
T04621
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
same
Sinorhizobium americanum
Pathway
same02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
same00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMCFNEI73_Ch2608 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
same03021
]
SAMCFNEI73_Ch2608 (rpoD)
Transcription machinery [BR:
same03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMCFNEI73_Ch2608 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF4350_C
Relaxase_C
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
APG91885
UniProt:
A0A1L3LP84
LinkDB
All DBs
Position
complement(2616183..2618237)
Genome browser
AA seq
684 aa
AA seq
DB search
MATKVKENEEADVEREGTPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEEAEEAAGGDDEDAGDDSESEGGELATVSGTALATGKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRD
ELNEGQTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRKSRVAANDDD
ITNVGGEGQPVEEEEEDDDESNLSLAAMEAELRPQVMETLDIIAETYKKLRKLQDQQVEA
RLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYSGAELDPNWMKSISNLAGKGWKEFAKAENQTIRDIRQEIQNLAT
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaagtcaaagaaaacgaagaagcagacgttgaacgcgaaggcactccggac
ggtccgcttctcgatctttccgacgacgctgtcaagaagatgatcaaagccgccaagaag
cgcggctatgtgacgatggacgaattgaattccgtcctgccttccgaggaagtcacctcc
gagcagatcgaagacacgatggcgatgctctccgacatgggcatcaacgtcatcgaggac
gaggaagccgaggaggccgccggcggcgacgacgaggacgctggcgacgacagcgagagc
gaaggcggcgagctggcgacggtcagcggcacggcgcttgccaccggcaagaagaaggag
ccgacagaccgcaccgacgacccggtgcgcatgtatctgcgcgagatgggctcggtggaa
ctgctctcccgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggccgcgaaacg
atgatcgccggtctttgcgaaagcccactcaccttccaggcgctgatcatctggcgcgac
gagctgaacgagggccagacgctgctgcgcgagatcatcgatctcgaaaccacctattcc
ggacccgaggccaaggctgctccgcagttccagagcccggaaaagatcgaagccgaccgc
aaggctgccgaggagaaggaaaagacccgcaagtcgcgcgttgcggccaatgatgacgac
atcaccaatgtcggcggcgaaggccagccggtcgaggaagaagaagaggacgacgacgag
tcgaacctctcactcgcagcgatggaagcggaacttcgcccgcaggtgatggaaacgctc
gacatcatcgccgagacctacaagaagctccgcaagctgcaggaccagcaggtggaagcg
cggctcgccgcgaccggtacgctgtcgccggcgcaggagcgccgctacaaggaactgaag
gacgagctgatcaaggcggtgaagtcgctgtcgctcaaccagaaccgcatcgatgcgctg
gtcgagcagctctacgacatttccaagcgcctgatgcagaacgagggccggctgctgcgc
cttgccgaatcctacggcgtcaagcgcgactccttcctcgagcaatattccggcgccgag
ctcgatccgaactggatgaagtcgatcagcaatctcgccggcaagggctggaaggaattt
gccaaggccgagaaccagacgatccgcgacatccgccaggagatccagaatcttgcgacc
gagaccggcatttcgattgccgagttccgccgcatcgtctcgatggtgcagaagggcgag
cgcgaggcgcggattgccaagaaggaaatggtcgaggcgaacctgcggctggtgatctcg
atcgccaagaagtacacgaaccgcggcctgcagttcctggacctcatccaggaaggcaat
atcggcctgatgaaggcggtggacaagttcgagtaccgccgcggctacaagttctcgacc
tatgcaacctggtggatccggcaggcgatcacccgctcgatcgccgaccaggcccgcacc
atccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacctcgcgccag
atgctgcacgagatcggccgcgagccgacgccggaagaactggcggaaaagctcgccatg
ccgctcgagaaggtgcgcaaggtcctgaagatcgccaaggagccgatctcgctcgaaacc
cccgtcggtgacgaagaggattcgcatctcggcgactttatcgaggacaagaacgcgctg
ctgccgatcgacgcggctatccaggcgaacctgcgcgaaacgacgacccgcgtcctcgcc
tcgctgacgccgcgcgaagaacgcgtcttgcgcatgcgcttcggcatcggcatgaacacc
gaccacacgctcgaggaagtcggccagcagttctcggttacccgcgagcgcattcgccag
atcgaggcgaaggccttgcgcaagctcaagcacccgagccgttcgcgcaagctgcgctcg
ttcctggacagctga
DBGET
integrated database retrieval system
