Sandaracinus amylolyticus: DB32_003443
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Entry
DB32_003443 CDS
T03935
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DB32_003443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
samy03019
]
DB32_003443
Messenger RNA biogenesis [BR:
samy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DB32_003443
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AKF06294
UniProt:
A0A0F6SF43
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All DBs
Position
complement(3949495..3951141)
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AA seq
548 aa
AA seq
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MIPLGGLGEIGMNCMAIEHGDDILVLDCGVTFDSRGLGIDLVHADFGYVLDRREKVRGLV
LTHGHEDHIGATSWFLRDIPVPVWGPPYALALVKQRIAEHPFHDIERLDLRTMQHGVEYA
IGPFSWELWRVTHSIPDAHGIVIRTPVGTIVHSGDFKIDRDPPPGDHMDLARIEEIAREG
VRVMMSDSTNALTHGHSGGERQVEQSLEELVRNARDRVVIGLFASNVGRIRALLDVARTT
GRKLIPMGRSVDTHLRIAEELGVITDPHDVLVPRDRARNIPREQCLIVATGSQGEGPAAL
PRLANGTHPDLELGAGDLVILSARIIPGNERAVLELINTLERRGISVVHRGNDPRVHVSG
HAHRDEQRELIQLVRPRTFVPVHGTFMHLKAHAEIARDAGVPEVFFFENGQVIELHEDRT
ELAERVHSGRVHIDHFEPVQERVIRDRTLLAQLGVVFVSLLCDQRGRILDDPQIVSRGVI
DEDADYDLLEDLRDDVRDAVETMRVPEDRISDELLRDQVRRAVRRFFGRELGRKPLVYAT
IARVETRR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgatcccgctcggtggcctcggcgagatcgggatgaactgcatggccatcgagcacggg
gacgacatcctcgtgctcgactgcggcgtgacgttcgactcgcgcgggctcggcatcgac
ctcgtgcacgccgacttcggctacgtgctcgatcgccgcgagaaggtacgcggactcgtg
ctcacccacgggcacgaggaccacatcggcgcgacgagctggttcctccgcgatatcccg
gtgcccgtgtggggcccgccctacgcgctcgcgctcgtgaagcagcgcatcgcggagcac
ccgttccacgacatcgagcgcctcgatctccgcacgatgcagcacggcgtcgagtacgcg
atcggcccgttctcgtgggagctgtggcgcgtcacgcactcgatccccgacgcgcacggc
atcgtgatccgcacgccggtcggcacgatcgtccacagcggcgacttcaagatcgatcgc
gatcccccgcccggcgatcacatggacctcgcgcgcatcgaggagatcgcgcgcgagggc
gtgcgcgtgatgatgtcggactcgaccaacgcgctcacgcacggccactcgggcggcgag
cgccaggtcgagcagagcctcgaagagctcgtgcgcaacgcgcgcgatcgcgtcgtgatc
ggcctcttcgcgtcgaacgtcgggcgcatccgcgccctgctcgacgtcgcgcgcacgacc
ggtcgcaagctgatcccgatgggccgctcggtcgacacgcacctgcgcatcgccgaggag
ctcggggtcatcaccgatccccacgacgtgctcgtcccgcgcgaccgtgcgcgcaacatc
ccgcgcgagcagtgcctcatcgtcgcgaccggctcgcagggcgaagggcccgccgcgctg
ccgcgcctcgcgaacggcacgcacccggacctcgagctcggcgccggcgatctcgtgatc
ctcagcgcgcgcatcatcccgggcaacgagcgcgcggtgctcgagctgatcaacacgctc
gagcgtcgcggcatctcggtggtgcatcgcggcaacgatccgcgcgtgcacgtgagcggt
cacgcccaccgcgacgagcagcgcgagctcatccagctcgtccgtccgcgcacgttcgtt
ccggtgcacggcaccttcatgcacctcaaggcgcacgccgagatcgcgcgcgacgcgggc
gtgcccgaggtcttcttcttcgagaacggtcaggtcatcgagctccacgaagatcgcacc
gagctcgcggagcgcgtgcactcgggccgcgtgcacatcgatcacttcgagccggtgcag
gagcgcgtcatccgcgatcgcaccctgctcgcgcagctcggcgtcgtgttcgtgtcgctg
ctctgcgatcagcgcgggcgcatcctcgacgatccgcagatcgtctcgcgcggcgtgatc
gacgaggacgccgactacgatctcctcgaggatctgcgcgacgacgtgcgcgacgcggtc
gagacgatgcgcgtccccgaggatcgcatcagcgacgagctgctgcgcgatcaggtgcgc
cgcgcggtgcggcgcttcttcggtcgcgagctcggccgcaagccgctcgtctacgccacc
atcgcgcgcgtcgagacccgtcgatga
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