Sandaracinus amylolyticus: DB32_004550
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Entry
DB32_004550 CDS
T03935
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
samy
Sandaracinus amylolyticus
Pathway
samy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DB32_004550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
samy03021
]
DB32_004550
Transcription machinery [BR:
samy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DB32_004550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Ctf8
DUF3450
PHM7_cyt
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AKF07401
UniProt:
A0A0F6YJT8
LinkDB
All DBs
Position
complement(5248066..5250066)
Genome browser
AA seq
666 aa
AA seq
DB search
MVERNGASGRKPAKARDAKSQDAEADDDGEEFEPRASSLPPPPSSGGRRLLGRERKEVQA
LLDKGRSKGFLTYDEVNEALPPEMVSSEQIDDLMMLLGDESIDVVDSANEGKATAAKARR
ERPDREVSGVQRRPEASDDDDDDDSPAPERRQATSAAPPSVDDAMNTKSNDPVRMYLRKM
GSVSLLTREGEVEIARRIEEGENKVFEVILSSKVGLGEVIELGEKLKKGKIRVREICKEE
ETTEEGQEVDEEEWKNRVVRLIDKVKRLEGQHQKIKEELEAAKKVSDRARKQAEQQMDKI
RRERFDTLRELRLNRKQIDRLVNTIKGFVRRVERAETQINEAERRAGGLTEKAIRQALRE
MQDNAATAKRLSKKIGAEPDQLKEILEEIAEARRGIKKVEEELGLPVDNLRATYRELHEG
ERDAEKAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKME
MPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVVSPIEAVINMNLEEQTRRVL
KTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLR
SFIENN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaggaacggggcgtcggggcgcaagccggcgaaggcgagggatgcgaagtcc
caggacgccgaggcggacgacgacggcgaggagttcgagcctcgggcttcgagcctgcct
ccgcctccgagcagcggcggtcgccgtctcctcggtcgcgagcgcaaggaggtccaggcg
ctgctcgacaagggccgcagcaagggcttcctcacctacgacgaggtgaacgaggcgctg
ccgccggagatggtcagctccgagcagatcgacgacctcatgatgctgctcggcgacgag
tcgatcgacgtcgtcgacagcgcgaacgagggcaaggcgaccgccgcgaaggcgcgtcgc
gagcgccccgaccgcgaggtctcgggcgtccagcgtcgccccgaggcgtcggacgacgac
gacgacgacgacagccccgcgcccgagcgccgtcaggccacgtcggcggcgccgccgagc
gtcgacgacgcgatgaacacgaagagcaacgacccggtccgcatgtacctgcggaagatg
ggctcggtctcgctcctcacgcgcgagggcgaggtcgagatcgcgcgtcgcatcgaagag
ggcgagaacaaggtcttcgaggtcatcctctcctcgaaggtcggcctcggcgaggtcatc
gagctcggcgagaagctcaagaagggcaagatccgcgtccgcgagatctgcaaggaagag
gagaccaccgaggaaggccaggaggtcgacgaggaggagtggaagaaccgcgtcgtccgc
ctcatcgacaaggtcaagcgcctcgagggtcagcaccagaagatcaaggaagagctcgag
gctgcgaagaaggtcagcgaccgcgcgcggaagcaggccgagcagcagatggacaagatc
cgtcgcgagcgcttcgacacgctgcgcgagctgcgcctgaaccggaagcagatcgaccgg
ctcgtcaacacgatcaagggcttcgtgcgccgcgtcgagcgcgcggagacgcagatcaac
gaggccgagcgtcgcgcgggcgggctcacggagaaggcgatccgccaggcgctccgcgag
atgcaggacaacgcggcgaccgcgaagcgtctctcgaagaagatcggcgcggagcccgat
cagctgaaggagatcctcgaggagatcgcggaggcgcgtcgcgggatcaagaaggtcgag
gaggagctcggtctccccgtcgacaacctgcgcgcgacgtaccgcgagctgcacgagggt
gagcgcgacgcggagaaggcgaaggcggagctcgtcgaggcgaaccttcgcctcgtcgtg
agcatcgcgaagaagtacacgaaccgcggcctgcagttcctggatctgatccaggagggc
aacatcggattgatgaaggcggtcgacaagttcgagtaccgccgcggctacaagttcagc
acgtacgccacgtggtggatccggcaggcgatcacgcgcgcgatcgccgatcaggcgcgc
acgatccgcatcccggtccacatgatcgagacgatcaacaagctgatccggacctcgcgt
tatctcgtccaggagctcggccgcgagccgacgccggaggagatcgccgagaagatggag
atgccgctcgacaaggtccgcaaggtcctgaagatcgcgaaggagcccatctcgctcgag
actccgatcggcgaggaggaagactcgcatctcggagacttcatcgaggacaagtcggtg
gtcagcccgatcgaggcggtcatcaacatgaacctcgaggagcagacgcgtcgtgtgctc
aagacgctgacgccgcgcgaagagaaggtcctccgcatgcgcttcggcatcggcgagaag
agcgaccacacgctcgaagaggtcggtcaggacttcgaggtgacgcgcgagcgcatccgt
cagatcgaggcgaaggcgctgaggaagctgaggcatccctcgaggagcaagcagcttcgg
tcgttcatcgagaacaactga
DBGET
integrated database retrieval system
