Sandaracinus amylolyticus: DB32_004766
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Entry
DB32_004766 CDS
T03935
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03410
Base excision repair
samy03430
Mismatch repair
samy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DB32_004766
03430 Mismatch repair
DB32_004766
03440 Homologous recombination
DB32_004766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
samy03400
]
DB32_004766
DNA repair and recombination proteins [BR:
samy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DB32_004766
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DB32_004766
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DB32_004766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CbiJ
DUF7697
Motif
Other DBs
NCBI-ProteinID:
AKF07617
UniProt:
A0A0F6W522
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Position
complement(5499310..5501061)
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AA seq
583 aa
AA seq
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MGDSVALSRPSSVPAPKSPENTAKAAWREAENDPPAALELGRALGISPTIAQILIHRGLQ
DPAVAREYLEPRLSGLTIPDGMIDRSAAADRLARAIRARERIAVFGDYDVDGTTSTAILC
DALEQMGGDVVALVASRFAGGYGLSAPALERVRATGATLLVTCDCGSSDHARVAAARAAG
IDVIVVDHHLVPAEPLPANAFLNPHRPDCAFPYKGLSSAGLALSLAAAVRAVLGAKLDLR
ELLDLVALGTIADVAPLDGDNRRLVRAGLVRLAQPTRPGLVALREQAKMRAGGSLGGIDV
AFRLAPRLNAAGRLGDPAITVALLRARTMVDARAHAIAIEALNEERKAITRRITEEAVAQ
VREIYDGRHDGGIVVASEGWHRGVVGIVAARLVDLFDAPVLAIAIEDGVGHGSGRTPAGF
PLYDAIKACRGELVTFGGHQAAAGLSVRAPRVDALRAAFDDTCRTLRAQRGDVDTSKRID
VVLDAASYPLPRASELALLEPLGASNQEPVVAVHGARVEDAQPVGDGHLKMVVRFGGTKL
RCFGWEMGASLERIGRQVDVIGTLRPDDWTGGEAVELRLAAVL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagcgtcgccctctctcgcccttcttccgttccagcgccgaaaagcccagaa
aacacagcaaaagctgcgtggcgcgaggccgagaacgatccgccggcggcgctggagctc
gggcgcgcgctggggatctcgccgacgatcgcgcagatcctgatccaccgcggcctgcag
gatcccgcggtcgcgcgcgagtacctcgagccgcgcctctcgggcctgacgatccccgac
ggcatgatcgatcgcagcgcggccgccgatcgtctggcgcgggcgatccgggcgcgcgag
cgcatcgcggtgttcggcgactacgacgtcgacggcacgaccagcaccgcgatcctgtgc
gacgcgctcgagcagatgggcggcgacgtcgtcgcgctcgtcgcgagccgcttcgcgggt
ggctacggcctgagcgcgccggcgctcgagcgggtgcgcgcgaccggtgcgacgctgctc
gtcacgtgcgactgcggctcgagcgaccacgcgcgcgtcgccgcggcgcgcgccgcgggc
atcgacgtgatcgtcgtcgatcaccacctcgttccggccgagccgctgcccgcgaacgcg
ttcctcaacccgcaccggcccgactgcgcgttcccctacaagggcctgtcgagcgcgggc
ctcgcgctctcgctcgccgccgcggtgcgtgcggtgctcggcgcgaagctcgatctgcgc
gagctgctcgatctcgtcgcgctcggcacgatcgccgacgtcgcgccgctcgacggcgac
aaccgacgcctggtgcgcgcgggcctggtgcgtctcgcacagccgacgcggccgggcctc
gtcgcgctgcgcgagcaggcgaagatgcgcgcgggtggctcgctcggcggcatcgacgtc
gcgttccgtctcgcgccgcgcctcaacgcagcgggcaggctcggcgatcccgcgatcacc
gtcgcgctcctgcgcgcgcgcacgatggtcgacgcgcgcgcccacgcgatcgcgatcgag
gcgctcaacgaagagcgcaaggcgatcacccggcgcatcaccgaggaagcggtcgcgcag
gtgcgcgagatctacgacggccgtcacgacggcggaatcgtggtcgcgtccgaagggtgg
caccgcggcgtggtcggcatcgtcgcggcgcgcctcgtcgacctgttcgacgccccggtg
ctcgcgatcgcgatcgaagacggcgtcgggcacggcagcgggcgcacgcccgcgggcttc
ccgctctacgacgcgatcaaggcgtgccgcggcgagctcgtcacgttcggcgggcaccag
gccgcagcagggctcagcgtgcgtgcgccgcgcgtggacgcgctgcgcgctgcgttcgac
gacacgtgccgcacgctccgcgcgcagcgcggggacgtggacacgtcgaagcgcatcgac
gtcgtgctcgacgcggcgagctacccgctgccgcgcgcgtcggagctcgcgctgctcgag
ccgctcggcgcatcgaaccaggagcccgtcgtcgcggtgcacggcgcgcgcgtcgaggat
gcgcagccggtcggggacgggcacctcaagatggtcgtgcgcttcggcggcacgaagctg
cgctgcttcggctgggagatgggcgcgtcgctcgagcgcatcggccgccaggtcgacgtg
atcggcacgctccgccccgacgactggacgggcggcgaagccgtcgagctccgcctcgcc
gccgtcctctga
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