Sandaracinus amylolyticus: DB32_005480
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Entry
DB32_005480 CDS
T03935
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DB32_005480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
samy03019
]
DB32_005480
03400 DNA repair and recombination proteins [BR:
samy03400
]
DB32_005480
Enzymes [BR:
samy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DB32_005480
Messenger RNA biogenesis [BR:
samy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DB32_005480
DNA repair and recombination proteins [BR:
samy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DB32_005480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AKF08331
UniProt:
A0A0F6W5Y2
LinkDB
All DBs
Position
complement(6380615..6382690)
Genome browser
AA seq
691 aa
AA seq
DB search
MTAAFALVPLADPDDDPAPAPEGRDAGHDPPVVLAAPAVNARTQHSRDDAARGRDDDLDR
QLSERFGLPSFRPWQREAVAEILHGSGRCLVLAPTGGGKSLCYQFPASVLGGTSIVISPL
IALMEDQVRSLNDRGIPATYLASTVDADERRARERDLFAGKFALVYIAPERLAAPGVVEK
LARLRPPLVAIDEAHCISQWGHDFRPDYLRIGEVLRALAPPRVVACTATATPAVRAEILE
KLGLPDGETKVVLRGFARPNLHLSAIECDGRSSRRSWMMRAIDDALGSPREPKGAAIVYA
GTRRSTEEVAGLVAARGYRVAAYHAGLEPEQRSVVSEAFAKRQLDVVVATNAFGMGIDRP
DIRCVVHVAPPGSIEAYYQEVGRAGRDGQPAWGLLLSGSNDIGLRRRLIEHGRDGQQVDP
AERDRQWNLFRELLRYVEAGSCRHDFILRYFGDEQELLGGCGHCDVCERLEREGEGERKI
GEEEALIVRKALAGVARAQRRAGMLAVADMLHGVSDERQKKLGFTELSTFGILKGHSREW
LISLLRRMVTAGLVEITASEFPMPYLSALGAKVMRAQEPVRVLLPPVETTKAPKGRGGTR
VERDGSARTTAAVAGLSSKTAAAFERLRAVRLEIAKEQHVPAYVVCHDRVLVEIAERRPT
TIDEMAQVRGMGPARIAAYGERFLAALDEGG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgccttcgccctcgtgcctctcgccgatcccgatgacgatcccgcgcccgcg
ccggaagggcgcgatgctggtcacgacccgcccgtcgtgctagccgccccggccgtgaac
gcgcgcacgcagcacagccgtgacgatgccgcgcgcggccgggacgacgacctcgatcgc
cagttgagcgagcgcttcggccttccgagctttcggccgtggcagcgcgaggcggtcgcg
gagatcctgcacgggagcgggcgctgcttggtgctcgcgccgacgggcggcgggaagtcg
ctctgttaccagttccccgcgtcggtgctcggcggcacgtcgatcgtgatctcgccgctg
atcgcgctgatggaggatcaggtccgcagcctgaacgatcgcggcatccccgcgacgtac
ctggcgtcgacggtcgatgcggacgagcggcgcgcgagagagcgcgatctgttcgcgggg
aagttcgcgctcgtctacatcgcgccggagcggctcgccgcgccgggcgtggtcgagaag
ctcgcgcggcttcgcccgccgctggtcgcgatcgacgaggcgcactgcatctcgcagtgg
gggcacgacttccggcccgactacctgcgcatcggcgaggtgctgcgcgcgctcgcgccg
ccgcgcgtggtcgcgtgcaccgcgacggcgacgccggcggtccgggcggagatcctcgag
aagctcggcctaccggacggggaaaccaaggtcgtgctgcgcgggttcgcgcgcccgaac
ctgcacctgtcggcgatcgagtgcgacgggcgcagctcgcggcgcagctggatgatgcgc
gcgatcgacgacgcgctcggcagcccgcgcgagccgaagggcgcggcgatcgtctacgcg
ggcacgcgcaggtcgacggaggaggtcgcggggctggtcgcggcgcgcgggtatcgcgtc
gcggcgtaccacgcggggctcgagcccgagcagcgcagcgtggtgagcgaggccttcgcg
aagcgtcagctcgacgtggtggtcgcgacgaacgcgttcggcatgggcatcgatcgcccg
gacatccggtgcgtcgtgcacgtcgcgccgccgggctcgatcgaggcgtactaccaggag
gtcggccgtgcggggcgcgacgggcagccggcgtggggcctcctgctgagcgggtcgaac
gacatcgggctgcggcggaggctgatcgagcacggtcgcgacgggcagcaggtcgatccc
gcggagcgcgatcgccagtggaacctgttccgcgagctgctgcgctacgtcgaggcgggc
agctgccggcacgacttcatcctccggtacttcggggacgagcaggagctgctcggtggc
tgcggccactgcgacgtgtgcgagcgcctcgagcgcgagggcgagggcgagcggaagatc
ggcgaggaggaggcgctgatcgtgcgcaaggcgctcgcgggcgtggcgcgcgcccagcgt
cgcgcgggcatgctcgcggtcgccgacatgctgcacggcgtgagcgacgagcgtcagaag
aagctcgggttcacggagctgagcacgttcgggatcctgaagggtcactcgcgcgagtgg
ctgatctcgctgctgcgccggatggtcacggcggggctcgtcgagatcacggcgagcgag
ttcccgatgccgtacctcagcgcgctcggcgcgaaggtgatgcgcgcgcaggagccggtg
cgcgtgctccttccgccggtcgagacgacgaaggcgccgaaggggcgcggcggcacgcgc
gtggagcgcgacgggagcgcgcgcacgacggcggcggtcgcggggctgagctcgaagacg
gcagcggcgttcgagcggctgcgcgcggtgcggctcgagatcgcgaaggagcagcacgtg
ccggcgtacgtcgtctgccacgatcgcgtgctggtcgagatcgcggagcgacgaccgacg
acgatcgacgagatggcgcaggtgcgcgggatgggccccgcgcgcatcgcggcgtacggc
gagcgcttcctcgccgcgctggacgagggcggctga
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