Sandaracinus amylolyticus: DB32_008017
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Entry
DB32_008017 CDS
T03935
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DB32_008017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
samy03019
]
DB32_008017
Enzymes [BR:
samy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DB32_008017
Messenger RNA biogenesis [BR:
samy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DB32_008017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKF10868
UniProt:
A0A0F6W9H1
LinkDB
All DBs
Position
complement(9284191..9285681)
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AA seq
496 aa
AA seq
DB search
MQFRDLGLSAPLLRAIEQTGYETPTPIQREAIPPAIAGRDVLGCAQTGTGKTAAFALPLL
QRLDASAGDEPKLRALVLTPTRELAIQIGDSFTTYGKGLDLWHTVIFGGVNEKPQIAELR
DGVDALIATPGRLLDLMNQGHVKLADVEIFVLDEADRMLDMGFLPDVKRVIAKLPRERQT
LFFSATMPPDIRALADSLLRDPVSVAVTPVSSTAERIDQHVYFVDKGNKPRLLVDLLKKD
PAIEHTLVFTRTKHGANKVVQQLEKAGLKAAAIHGNKSQNARERAMTGFRTGELRLLVAT
DIAARGIDVEGITHVINYDLPNIPETYVHRIGRTGRAGAAGIAISFCESEERPYLVDIER
LIGKHVPRVEQHAYPPSEPLPPMTDLARRGGGGAGPRPAQRPSGGGGGGRPQHARGGGPS
RGPGGGGRGPIVERVSRGKSEGPIVERKPAGERSAAAEGGSAAQPGDGGRRRKRRRGGRG
RRPGGPRPEAQGAPTR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtttcgtgacctgggcctctcggcccccctcctccgcgcgatcgaacagaccggc
tacgagacgccgactccgatccagcgcgaggccattcctcccgccatcgccggccgcgac
gtcctcggatgcgcgcagaccggcaccggcaagaccgcagcgttcgcgctgcccctcctg
cagcgcctcgacgcgagcgcgggcgacgagcccaagctccgtgccctcgtcctcacgccc
acgcgcgagctcgcgatccagatcggcgactcgttcacgacgtacggcaagggcctcgac
ctctggcacaccgtgatcttcggtggcgtcaacgagaagccgcagatcgccgagctccgc
gacggagtcgacgcgctgatcgccacgccgggccgcctgctcgacctgatgaaccagggc
cacgtgaagctcgccgacgtcgagatcttcgtgctcgacgaggccgatcgcatgctcgac
atgggcttcctgcccgacgtgaagcgcgtgatcgcgaagctcccgcgcgagcgccagacg
ctcttcttctcggcgacgatgccgcccgacatccgcgcgcttgcagactcgctgctgcgt
gatccggtgagcgtcgcggtgacgccggtctcgtcgaccgcggagcgcatcgatcagcac
gtgtacttcgtcgacaagggcaacaagccgcgcctgctcgtcgacctgctgaagaaggat
ccggcgatcgagcacacgctcgtcttcacgcgcacgaagcacggcgccaacaaggtcgtg
cagcagctcgagaaggcggggctcaaggccgccgcgatccacggcaacaagtcgcagaac
gcgcgagagcgcgcgatgaccggcttccgcaccggcgagctgcgcttgctggtcgcgacc
gacatcgcggcgcgcggcatcgacgtcgaggggatcacccacgtgatcaactacgacctg
ccgaacatccccgagacgtacgtgcaccgcatcggtcgcaccgggcgcgcgggcgcggcg
ggcatcgcgatctcgttctgcgagagcgaggagcgcccgtacctcgtcgacatcgagcgg
ctgatcggcaagcacgtgccgcgcgtcgagcagcacgcgtacccgccgagcgagccgctg
ccgccgatgaccgatctcgcgcgtcgcggcgggggcggtgcgggcccgcgccccgcccag
cgtccgagcggcggtggcggcggtggacggccgcagcacgcgcgcggaggcggaccttcg
cgcggaccgggcggcggcgggcgcggtccgatcgtcgagcgtgtgtcgcgcggcaagagc
gaaggcccgatcgtcgagcgcaagccggcgggcgagcggagcgctgccgcggagggtggc
tcggcggcgcagccgggtgacggcgggcggcgtcgcaagcgtcgccgtggcggtcgcggg
cgccggcccggtgggccgcggcccgaggcgcagggcgctccgacgcgctga
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