Sandaracinus amylolyticus: DB32_008273
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Entry
DB32_008273 CDS
T03935
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DB32_008273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
samy03400
]
DB32_008273
Enzymes [BR:
samy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DB32_008273
DNA repair and recombination proteins [BR:
samy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DB32_008273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKF11124
UniProt:
A0A0F6SHV9
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All DBs
Position
complement(9577415..9580924)
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AA seq
1169 aa
AA seq
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MIEASAGTGKTHTLEHLVIDLLREGTPIERILVVTFTEKATLEMRARIRARIASLVTALS
PVENERLRAALLDFDRAPISTIHAFCQRVLAEQAFASGRLLEQQRLDPREAFAKSFRDAL
RRGLAANAPERPLLEQAIAAMGASKLEDVLWRWSLERGEVRPRFDAESLVAAIAAMPDAA
ELEGALGRTLLHSVGHHAVRARARETFATLAPFVAKARAAEPVDAWLPSLLAWANDAPNR
AAERNVDYLAIHLGAHPVIGAHVRTLAAHASSALPVLIGRVLPAIVKRLDEDKRKNGRFD
FDDMLRLVHEALHGPRGDDVTAALRARYRYALVDEFQDTDPVQWAIFRRVFFDREDGGAL
VLIGDPKQSIYAFRSADVHTYLAVCDEVVAAGGVKVPLVDCYRSTQPMIDAVNLVLRETF
FTGPNRYDHPVRCGRPALVAEDATTSAPIVLLHLHADDELRAKPMRFALANAIADEIARL
IDGGMQVTDRSRDDGALRPLQPSDVFVLTRTGKEAQEVAEALRRRGIPHALSSQEGLFDT
REARDVLDVLRALEDPGSRALRLRAWMTPFFAVTQDELDACRALPGDHPFALRIARWTQL
ARDHRFAALFQSMLDESGLARRLLFLREGERELVNYQHVLEILLARASQGRLALREITTE
LGELVDTRRKVAGDDEDVQRLESERAAVQLLTMHKSKGLEAEVVFLFGGMTQRPAGAHEP
HVFHEDGQRVAWIGDPGGELGAQVHEEERHEHERLLYVALTRARSRSYLPYIGPAPARDA
LPAGTGSTFARLAGAYRVLADRLVQLVDRDQLDPALFARSMVKVTGARRRIAIPAPLPAI
DATTTSAALTIPALDPPERFTTLRGAARGIEVTSYTRMKAGRARLGLDRTHDDQTAWIEE
LASDATAAVVPIEADDPLPAGAAFGVFVHEILEHVDVQHVIASADRDALLAHEPTSALFA
ASAERNGIDPRVIPPSAELVMRTLKTPIRAGTLALPEGFASLTKTVAEMSFLHPIPERAH
PLFGDWQSPDRAPLTIERGFVRGVIDLIFEHAGRIYVLDWKTDRLPTYDAASLEAHVAAH
YEIQARLYALGVARMLRIASASEHDARFGGIVYCFVRGMKANKRGPTEGVTFARPTFDTL
AEWDRALRDEDAPWGHPLPPRPRREEARS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaggcctcggccgggacgggcaagacccacacgctcgagcacctcgtcatcgat
ctgctccgcgaggggacgccgatcgagcgcatcctcgtcgtgacgttcaccgagaaggcg
acgctcgagatgcgcgcccgcatccgcgcgcgcatcgcgtcgctcgtcaccgcgctctcg
ccggtcgagaacgagcggctgcgcgcggcgctgctcgacttcgatcgcgcgccgatctcg
accatccacgcgttctgccagcgggtgctcgcggagcaggcgttcgcgagcggacgattg
ttggagcagcaacgattggatccgcgcgaggcgttcgcgaagagcttccgcgatgcgctg
cgacgagggctcgcggcgaatgcgccggagcgtccgctgctcgagcaggcgatcgcggcg
atgggcgcatcgaagctcgaggacgtgctgtggcgctggtcgctcgagcgcggtgaggtg
cggccgcgcttcgatgccgagtcgctggtcgcggcgatcgcggcgatgcccgatgcggcg
gagctcgagggcgcgctgggccgcacgttgctgcactcggtcggtcaccacgcggtgcgg
gcgcgggcgcgcgagacgttcgcgacgctcgcgcccttcgtggccaaggcgcgcgcggcg
gagcccgtcgacgcgtggcttccgtcgttgctcgcgtgggccaacgacgcgccgaaccgc
gcggccgagcgcaacgtcgactacctcgcgatccacctcggcgcgcacccggtgatcggc
gcgcacgtgcgcaccctcgcggcccacgcgtcgagcgcgctgccggtgctgatcggtcgc
gtgctcccggcgatcgtgaagcgcctcgacgaggacaagcgcaagaacgggcgcttcgac
ttcgacgacatgctgcgcctggtgcacgaggcgctgcacggaccgcgcggcgacgacgtc
accgcggcgctgcgcgcgcgctatcgctacgcgctggtcgacgagttccaggacaccgat
ccggtgcagtgggcgatcttccgccgcgtcttcttcgatcgcgaggatggtggcgcgctg
gtgctgatcggcgatcccaagcagtcgatctacgcgttccgcagcgccgacgtgcacacg
tacctcgcggtgtgcgacgaggtcgtcgccgcgggcggcgtgaaggtgccgctggtcgac
tgctaccgctcgacgcagccgatgatcgacgcggtgaacctcgtgctgcgcgagacgttc
ttcaccggcccgaatcgctacgaccacccggtgcgctgcggtcgccccgcgctggtcgcc
gaggacgcgaccacgagcgcgccgatcgtgctcttgcatctccacgccgacgacgagctg
cgcgccaagccgatgcgcttcgcgctcgcgaacgcgatcgccgacgagatcgcgcggctg
atcgacggcggcatgcaggtcaccgatcgatcgcgcgacgacggggcgctgcgtccgctg
cagccgagcgacgtcttcgtgctcacgcgcaccggcaaagaggcgcaggaggtcgcggag
gcgctgcgtcgcagagggatcccgcacgcgctctcgtcgcaagaagggctcttcgacacc
cgcgaggcgcgcgacgtgctcgacgtgctgcgcgcgctcgaagatcccggctcgcgcgcg
ctgcgcctccgcgcgtggatgacgccgttcttcgcggtgacccaggacgagctcgatgcg
tgccgcgcattgccgggcgatcacccattcgcgctgcgcatcgcgcgctggacgcagctc
gcgcgcgatcaccgcttcgccgcgctgttccagtcgatgctcgacgagagcgggctcgcg
cgtcgcctcctcttcctgcgcgagggcgagcgcgagctggtgaactaccagcacgtgctc
gagatcctgctggcgcgcgcgagccagggacgcctcgcgctgcgcgagatcacgaccgag
ctcggcgagctggtcgacacccggcgcaaggtcgcgggcgacgacgaggacgtgcagcgc
ctcgagagcgagcgcgccgcggtgcagctcctcacgatgcacaagagcaagggcctcgag
gcggaggtcgtcttcctgttcggcggcatgacccagcgcccggcgggcgcgcacgagccc
cacgtgttccacgaggacggccagcgcgtcgcgtggatcggcgatcccggcggcgagctc
ggcgcgcaagtgcacgaagaagagcgccacgagcacgagcgactgctctacgtcgcgctc
acccgcgcgcgctcgcgctcgtacctgccgtacatcgggcccgcgccggcgcgcgatgcg
ctgccggcgggcaccggctcgacgttcgcgcggctcgcgggcgcgtatcgcgtgctcgcc
gatcgactggtgcagctcgtcgatcgcgatcagctcgatcccgcgctcttcgcgcgctcg
atggtgaaggtcaccggcgcgcggcgtcgcatcgcgatccccgcgccgctgcccgcgatc
gacgcgaccaccaccagcgcggcgctgacgatcccggcgctcgatccgcccgagcgcttc
accacgctgcgcggcgcggcgcggggcatcgaggtcacgtcgtacacccgcatgaaggcg
gggcgcgcgcggctcgggctcgatcgcacccacgacgatcagaccgcgtggatcgaggag
ctcgcgagcgacgcgaccgccgcggtggtgccgatcgaggccgacgatccgctgcccgcg
ggcgcggcgttcggcgtgttcgtccacgagatcctcgagcacgtcgacgtgcagcacgtg
atcgcgagcgcggatcgcgacgcgctgctcgcgcacgagccgacgagcgcgctgttcgcg
gcgtcggccgagcgcaacggcatcgatccccgggtgatcccgccgagcgccgagctcgtg
atgcgcacgctgaagacgccgatccgcgcgggcacgctcgcgctgcccgagggcttcgcg
tcgctgaccaagaccgtcgcggagatgtcgttcctccatccgatccccgagcgcgcgcac
ccgctcttcggcgactggcagagcccggatcgcgcgccgctcacgatcgagcgcggcttc
gtgcgcggcgtgatcgatctgatcttcgagcacgcgggccgcatctacgtgctcgactgg
aagaccgatcgactgccgacctacgacgcggcgtcgctcgaggcgcacgtcgccgcgcac
tacgagatccaggcgcggctctacgcgctcggcgtcgcgcgcatgctgcgcatcgcgagc
gcgagcgagcacgacgcgcgcttcggcgggatcgtctactgcttcgtgcgcggcatgaag
gcgaacaagcgcgggccgaccgagggcgtgacgttcgcgcgaccgacgttcgacacgctc
gcggagtgggaccgcgcgctgcgcgacgaggacgcgccgtggggccacccgctgccgccg
cgcccgcggcgcgaggaggcacgctcgtga
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