Streptococcus agalactiae NEM316 (serotype III): gbs1548
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Entry
gbs1548 CDS
T00104
Name
(GenBank) Unknown
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
san
Streptococcus agalactiae NEM316 (serotype III)
Pathway
san03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
san00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
gbs1548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
san03019
]
gbs1548
03016 Transfer RNA biogenesis [BR:
san03016
]
gbs1548
Enzymes [BR:
san01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
gbs1548
Messenger RNA biogenesis [BR:
san03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
gbs1548
Transfer RNA biogenesis [BR:
san03016
]
Prokaryotic type
tRNA degradation factors
gbs1548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
HTH_DeoR
S1_RRP5
HTH_24
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CAD47207
UniProt:
Q8E454
LinkDB
All DBs
Position
complement(1613404..1615809)
Genome browser
AA seq
801 aa
AA seq
DB search
MKEKIIKYLEEHGKTSVNDLAAALDMAGAKAFPKLIKTISNLESHRQLRFDDNGSLSLRK
KEAKKKEITVRGLFRANKAGFGFLSIDQDEDDMFIGKNDIAYAIDGDTVEAVVKKPADRL
KGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSKNQKINQKIYIRKEPVVLDGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPEDVIAEANAI
PDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKLLDNGHFELGVHIADVSYYVTE
GSALNREALSRGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSCIMEIDQNGKVVNH
QITQSVINTTYRMTYTAVNDIIAGDEEICSEYESIVPSVQHMVTLHHTLEAMRTRRGALN
FDTSEAKIMVNDKGMPVDIVIRNRGIAERMIESFMLAANETVAEHYARLKLPFIYRIHEE
PKAEKLQKFIDYASIFGVHIQGTATKITQSALQDFMKKVQGQPGSEVLSMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIRDYGDKAMDKADHFANLIPEIATQT
SSLERRAIDAERIVEAMKKAEYMEEYVGEEFEGVVASVVKFGMFVELPNTIEGLIHVTTL
PEYYHFNERTLTLQGEKSGKVFRVGQQIKVKLIRSDKETGDIDFDYLPSDFDIVEKVSKS
SREGRPNRSSKRELQHRISERDNKNKNTSKKKASRKPKRNSDSKSHHHKDDRTTGSTKKK
TKKTFYKGVAKKGQKRKSKKG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaattataaaatatttggaagaacacggtaaaaccagcgttaatgactta
gctgctgccctagatatggcaggcgcaaaagcatttccaaaattaatcaaaacaatctca
aatttggagagccacaggcaattaagatttgacgataatggaagtctttctcttcgaaag
aaagaagctaagaaaaaggaaatcacagtaagaggtctttttagagcaaataaagcagga
tttggttttcttagtattgaccaagacgaagatgatatgtttatcggaaaaaacgatatt
gcttatgctattgatggtgacacagtagaagctgttgtaaagaaaccagcggaccgtctt
aaagggactgcagcagaagcgcgtgttgttaatattgttgaacgtagtttaaagacgctt
gttggtaagtttgtcttagacgatgagcgccctaaatacgcaggatatatcaaatcaaaa
aatcaaaaaattaatcaaaaaatttatatacgcaaagaaccggtcgttttagacggaaca
gaaattatcaaagtagatattgataaatatccgacacgaggacatgattacttcgtagca
agtgtccgtgatatcgttggacatcaaggagatgttggtattgatgttttagaagtcttg
gaaagtatggatatcgtctcagaatttcctgaggacgttattgcagaagctaatgctatc
ccagatgctccaacggagaaagatttaattgggcgtgttgatttacgtcaagaggtcact
ttcactattgatggagctgacgccaaagatttagacgatgctgtgcatattaaattactg
gataatggtcattttgaacttggagttcatatcgcagatgtatcatactatgttactgaa
ggctctgccttaaatcgtgaagcacttagtcgtggtacgtccgtatatgtcacagatcgc
gttgtaccaatgttaccagagcgtctatctaacggtatatgttcattaaatccaaatctt
gatcgtttaacgcagtcttgtattatggaaattgaccaaaatgggaaagttgttaatcat
caaattacacagtcagtgattaataccacttatcgtatgacttatactgctgtaaatgat
attattgctggcgatgaggaaatctgctcagaatatgagtctattgtgccctcagtacag
catatggttactttacaccatactttggaagctatgcgtacgcgtcgtggagcgctgaat
tttgacacatctgaagcaaaaattatggttaatgataagggaatgccagttgatattgtt
attcgcaacagaggcattgctgaacgcatgattgagtcatttatgttggcggcaaatgaa
acggttgctgaacattatgctcgtctaaaattaccatttatttatcgtatacacgaagag
cctaaagctgaaaaattacaaaaattcatcgattatgcttctattttcggtgttcacatt
caaggaacagcaactaaaatcacccaatctgctttacaggactttatgaaaaaagtacaa
gggcagccaggaagtgaagtgttatctatgatgttattgcgctcgatgcaacaagctaga
tattctgaacacaaccatggacattatggacttgctgcggaatattacactcactttact
agccccattcgacgttatccagacttgttagttcatcgtatgattcgtgattatggtgat
aaagcgatggataaagctgatcattttgctaaccttatcccagaaattgcaactcaaacg
tctagtcttgagagacgtgccattgatgctgaacgtattgtagaggcaatgaagaaagct
gaatatatggaagaatatgttggtgaggaatttgaaggtgtggttgcaagcgttgttaaa
tttggtatgtttgtagaattaccaaatactattgaaggattgattcacgtaacgaccttg
cctgaatattatcactttaatgaacgtacgctgacgcttcaaggtgagaaatctgggaaa
gttttccgtgttggtcaacaaattaaggttaagttgattcgttctgataaggaaactggt
gatatcgattttgattatttaccatcagattttgatattgtcgaaaaggtaagtaaaagt
tcgcgtgagggtcgtcctaatcgaagttctaaacgagaacttcagcatagaatttctgag
cgtgataataagaacaaaaatacatctaagaaaaaagcatctcgaaaacccaaaaggaac
tcggatagcaaatcacatcatcacaaagacgatagaacaacaggttcaaccaagaaaaaa
acgaaaaaaactttctataaaggcgttgctaagaaaggtcaaaaacggaaatctaagaaa
ggttaa
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