Sandaracinobacteroides saxicola: H3309_04980
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Entry
H3309_04980 CDS
T06739
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sand
Sandaracinobacteroides saxicola
Brite
KEGG Orthology (KO) [BR:
sand00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sand03016
]
H3309_04980
Enzymes [BR:
sand01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H3309_04980
Transfer RNA biogenesis [BR:
sand03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H3309_04980
Prokaryotic type
tRNA splicing ligases
H3309_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QMW23832
UniProt:
A0A7G5IKE0
LinkDB
All DBs
Position
995760..996980
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AA seq
406 aa
AA seq
DB search
MTDHRYSVHETAGVPLKLWDSHGAFEDGAMAQLRNVASLPFVHSHVAGMPDVHWGMGATV
GSVIATKAAIIPAAVGVDIGCGMMAVRTTALGRQLPDNLHAMRCAIEAAVPHGRTDNGGA
NDRGAWGEPPADALAVWAAIEDGYKAIIAKHPKAAAFNSARHLGSLGTGNHFIEVCLDEE
DRLWVMLHSGSRGVGNRFGSYFIELAKKDMRRWFINLPDEDLAYFPEGTEHFADYWQAVS
WAQGFAKANRELMMAAVLRAIAPFLPPFETVQEAVNCHHNYVSREAHFGENVMVTRKGAV
RARAGELGIIPGSMGTGSFIVEGRGNPHSFQSCSHGAGRKMSRGAAKKAISLEQHADAMR
GIEARLDAGVLDESPAAYKDIGAVMAAQADLVTIRHRLRQVVNVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccatcgatacagtgttcacgaaaccgccggcgtgccgctgaagctgtgggac
agccatggcgcgttcgaggacggcgccatggcgcagctgcgcaacgtcgccagcctgccg
ttcgtgcacagccatgtcgccggcatgcccgacgtgcactggggcatgggcgccaccgtg
ggcagcgtcatcgccacgaaggcggcgatcatcccggccgcggtgggcgtggacatcggc
tgcggcatgatggcggtgcgcaccacggcgcttggccgtcagctgccggacaatctgcac
gccatgcgctgcgccatcgaagccgcggtgccgcacggccgcaccgacaacggcggcgcc
aacgaccgcggcgcctggggcgagccgccggcggacgcgctcgccgtgtgggcggcaatc
gaagacggctacaaggcgatcatcgccaagcatcccaaggcagcggcgttcaacagcgcc
cgccacctggggtcgctgggcaccggtaaccacttcatcgaggtctgcctggatgaggag
gaccggctgtgggtgatgctgcacagcggctcgcgcggggtgggcaaccggttcggcagc
tatttcatcgagctggcgaagaaggacatgcgccgctggttcatcaacctgccggacgag
gacctggcctatttcccggaaggcaccgagcatttcgccgattactggcaggcggtcagc
tgggcgcagggcttcgccaaggccaaccgcgagctgatgatggcggcggtgctgcgcgcc
atcgcgcccttcctgccgccgttcgaaacggtgcaggaggcggtgaactgccaccacaac
tatgtcagccgcgaagcgcatttcggcgagaatgtgatggtgacccgcaagggcgccgtg
cgggcgcgcgccggcgagctggggatcatcccgggcagcatgggcacgggcagcttcatc
gtggaggggcggggcaacccgcacagcttccagtcgtgcagccatggcgcggggcggaaa
atgtcccgcggcgcggcgaagaaggcgatcagcctggagcagcatgccgacgccatgcgc
gggatcgaggcgcggctggatgccggcgtgctggatgaaagcccggcggcctacaaggac
atcggtgccgtgatggcggcgcaggccgacctggtgacgatccgccaccggctgcggcag
gtggtcaatgtgaaggggtaa
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