Sandaracinobacteroides saxicola: H3309_05890
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Entry
H3309_05890 CDS
T06739
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sand
Sandaracinobacteroides saxicola
Pathway
sand03030
DNA replication
sand03430
Mismatch repair
sand03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sand00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H3309_05890 (dnaE)
03430 Mismatch repair
H3309_05890 (dnaE)
03440 Homologous recombination
H3309_05890 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sand03032
]
H3309_05890 (dnaE)
03400 DNA repair and recombination proteins [BR:
sand03400
]
H3309_05890 (dnaE)
Enzymes [BR:
sand01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H3309_05890 (dnaE)
DNA replication proteins [BR:
sand03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H3309_05890 (dnaE)
DNA repair and recombination proteins [BR:
sand03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H3309_05890 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF4175
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QMW23996
UniProt:
A0A7G5IKV4
LinkDB
All DBs
Position
1169239..1172691
Genome browser
AA seq
1150 aa
AA seq
DB search
MAAFVPLRAQSCYSMLDSTIEPKALAKACAKMGMPAVALCDRANLFAAMEFSDACLKEGV
QPIIGVALPLLRGGEARPGARAVIDWLPLLAQDEAGYANLLALVSAAHLAGEGEVALPLG
ALEGRTAGLIALTGGADGALARLLAEGQDAAAADYADALERLFPGRLYVEISRSGEALES
ASEAGLLDLAYARDLPLVASNVARFLEPAGHEAHDVMLCIADGAYVESDERRRSNPEHWL
KPADVMARLFADLPEALANTLVVARRCAVAAPERKPILPRLVPDRAAEDARLAEEARAGL
AARLAVVRPADAAPYEERLAFELGVIAGMGFSGYFLIVADFIGWAKARGIPVGPGRGSGA
GSVVAWALLITDLDPLEHGLIFERFLNPERVSMPDFDIDFCETRRGEVIDYVQARYGRDH
VAQIITFGKLKARAVLKDVGRVMQLPYGQVDRLAKLVPNVPADPWSLDRTLAGVPELRAE
MRADAKVARLVELARSLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMPVSQFDLK
WVEKAGLVKFDFLGLKTLSVLARAKLLLGAAAPDLDRLPWADDGVFALMTRGDTVGVFQF
ESEGMRRALNQVRPTCFEDIIALGALYRPGPMDNIPSFAARKWGREEPDCLHPMLEPILK
PTYGVIIYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIQAEMDAQRARFVDGAVKNGVAA
DRATFIFNLVDKFAGYGFNKSHAAAYALVAWQTAWLKVYHPAAFFAASMAYDISVTDKLA
VLMDDARRMKVRVLPPCLNRSGSDFTVEGDAVRYALGALKGVGEAAMAALVAEREANGPF
RDIADFVARIDARALNRRQLEALAGGGAFDALEPDRARVFAAAEAMLAAAARAADARASG
QGGLFGGPSEPEAFPLPGAAPWKASERLAQERAAFGFYFSGHPVEAHGAVLAARGAERWA
EVSLRPPPVPDERGQMRTGATMAGLIEAVRWRVPNGKGADKRYLVVDLTDAGGAWQASCF
EAEVQPVLEAAAAAGTALLFSVELSWRPGEETPRVAIRGATPLDGLARTVRTRLIVSATA
ALAVADLAACLPRGGRGELMLRLPLPCGDAVVRLGRDFAFGEDIIVALGATPGVLSVESV
PVDPPLRLVA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctttgtcccgctgcgcgcgcagagttgttattcgatgctcgattcgacgatc
gagccgaaggcgctggcgaaggcgtgcgcgaaaatgggcatgccggcggtggcgctgtgc
gaccgtgccaatctgttcgcggcgatggagttttccgacgcctgtttgaaggagggggta
cagccgatcatcggggtggcgctgccgctgttgcggggtggcgaggcgcggccgggggcg
cgggcggtcatcgactggctgccgctgctggcgcaggacgaggcgggctatgccaacctg
ctggcgctggtgagcgccgcgcatctggcgggcgagggcgaggtggcgctgccgctgggg
gcgctggaggggcggacggcggggttgatcgcgctgaccgggggtgccgacggggcgctg
gcgcggttgctggcggaggggcaggacgcggcggcggctgattatgccgatgcactggag
cggctttttccggggcggctgtatgtggagatcagccgcagcggggaggcgttggagtcc
gcgagcgaggcggggttgctcgacctggcctatgcccgcgacctgccgctggtggccagc
aatgtggcgcggttcctggagccggcggggcatgaggcgcatgatgtgatgctgtgcatc
gccgacggcgcctatgtggagagcgacgagcggcggcggtccaaccccgagcattggttg
aagccggcggatgtgatggcccggctgttcgccgacctgcccgaggcgctggcgaacacg
ctggtggtggcgcggcgctgcgcggtggcggcgccggagcggaaaccgatcctgccgcgg
ctggtgccggatcgcgccgccgaggatgcgcggctggcggaggaggcgcgcgccgggctg
gcggcgcggctggcggtggtgcggccggcggatgcggcaccctatgaggagcggctggcg
ttcgagctgggcgtgatcgcggggatgggcttttccggctatttcctgatcgtggcggac
ttcatcggctgggcgaaagccagggggattccggtggggccggggcggggttcgggcgcg
ggcagcgtggtcgcctgggcgctgctgatcaccgacctggacccgctggaacatggcctg
atcttcgagcggttcctgaatccggagcgcgtgtcgatgccggatttcgacatcgatttc
tgcgaaacgcgccgcggtgaggtgatcgattatgtccaggcgcgctatggccgggatcat
gtggcgcagatcatcaccttcgggaagctgaaggcgcgcgcggtgctgaaggatgtgggg
cgggtgatgcagctgccctatggccaggtggaccggctggcgaagctggtgccgaacgtg
ccggcggacccgtggagtctggaccggacgctggcgggcgtgccggagctgcgcgccgag
atgcgcgccgatgccaaggtggcgcggctggtggagctggcgcggtctttggaagggttg
ccgcgacacagcagcacgcatgcggcgggcgtggtgatcggcgaccggccgctcgaccag
ctggtgccgctgtatcgcgacccgcggtccgacatgccggtgagccagttcgacctgaaa
tgggtggagaaggcggggctggtgaagttcgacttcctgggcctgaagacgctgtcggtg
ctggcgcgggcgaagctgttgctgggggcggcggcgcccgatctcgaccggctgccctgg
gcggatgacggggtgttcgcgctgatgacgcggggcgacacggtgggggtgttccagttc
gaaagcgaggggatgcggcgcgcgctcaaccaggtgcggccgacctgtttcgaggacatc
atcgcgctgggcgcgctctatcggccggggccgatggacaatatcccgagcttcgccgcg
cgcaaatgggggcgggaggagccggattgcctgcacccgatgctggagccgatcctgaag
ccgacctatggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgctggcg
ggatactcgctgggcgaggcggacctgttgcgccgggcgatggggaagaagatccaggcg
gaaatggacgcgcagcgggcgcggttcgtggacggggcggtgaagaatggcgtggcggcg
gaccgtgcgaccttcatcttcaacctggtggacaagttcgccggctatggtttcaacaag
agccatgcggcggcctatgcgctggtggcgtggcagacggcgtggctgaaggtctatcat
ccggcggccttcttcgcggcctcgatggcctatgacatcagcgtgaccgacaagctcgcc
gtgctgatggacgatgcgcggcggatgaaggtgcgggtgctgccgccgtgcctcaaccgt
tccggcagtgatttcaccgtggagggggacgcggttcgctatgcgctgggggcgttgaag
ggtgtcggcgaggcggcgatggcggcgctggtcgcggagcgggaggcgaacgggccgttc
cgcgacatcgccgatttcgtggcgcggatcgatgcgcgggcgctgaaccggcggcaactg
gaggcgctggcggggggcggggcgttcgatgcgctggagcccgaccgggcgcgcgtgttc
gcggcggcggaagcgatgctggcggcggcggcgcgggcggcggacgcgcgggcaagcggg
cagggcgggttgttcggcgggccgagcgagcccgaggcgttcccgctgccgggcgcggcg
ccgtggaaggcgagcgagcggctggcgcaggagcgggcggcgttcggattctatttcagc
gggcatccggtggaggcgcatggcgcggtgctggcggcgcgcggggcggagcgctgggcg
gaggtgtcgctgcgtccgccgccggtgccggacgagcgcgggcagatgcggaccggggcg
acgatggccgggctgatcgaggcggtgcgctggcgggtgccgaacggcaagggcgcggac
aagcgctatctggtggtggacctgaccgatgccgggggggcatggcaggcgagctgtttc
gaggccgaggtgcagccggtgctggaagccgcggcggcggcggggacggccctgctgttc
agcgtcgagctgtcgtggcggccgggggaggagacgccgcgggtggcgatccggggggcg
acgccgctcgacgggttggcgcggacggtgcggacgcggctgatcgtgagcgccacggcg
gcgctggctgtggcggacctggccgcgtgcctgccgaggggcggacgaggcgagctgatg
cttcggctgcccctgccctgtggggatgcggtggtgcggctgggccgcgatttcgccttt
ggcgaggatatcatcgtggcgctgggggcgacgccgggcgtcctttcggtcgaatcggtc
cccgtcgatccgccgttgcgcctggtggcctga
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