Streptococcus anginosus C1051: SAIN_0007
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Entry
SAIN_0007 CDS
T02828
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sang
Streptococcus anginosus C1051
Pathway
sang03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAIN_0007 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sang03400
]
SAIN_0007 (trcF)
Enzymes [BR:
sang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAIN_0007 (trcF)
DNA repair and recombination proteins [BR:
sang03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAIN_0007 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_22
MFD_D3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGU80815
LinkDB
All DBs
Position
5480..8986
Genome browser
AA seq
1168 aa
AA seq
DB search
MDKKMDIIELFNQNKQISDWQRNLNKSTRQLLMGLSSSTKSITMASCVEENHKILILTST
YSEAERLSSDLIDLVGEERVYTFLADDTPLAEFVFSSQEKIFSRLEALDFLLDSKQSGFL
IVNVAASQLFLSNPVNFNSAYINLKIGQEYELKDLISQLLNSGYKQVSQVLKQGEFSIRG
DILDIFERSSQMPFRVEFFGDEVDGIRLFNPENQISIQNVEHVCVHPATDIIFTKADYKS
AQKKIENLIEKTVDSTSKSYLEEILASTKEQIQHADIRKLLSYFYQNEWTILDYLPKHSP
IFFDDFQKIMNRHAQFQLEAANLLTEDLQNSKTVGNQSYFADTYSIFRKYKPATLFSNFH
KGLGNLKFDSLYQFNQYPMQEFFSQFQLLKEEISRYKKSNYTVIIQSNSLLTLQSLHKSL
QEYEIPLDYVNDTKIHKHAVQLVEGRLIQGFNFVDEKIVLITEYDILQKKVKRKVRRQII
SNAERLKNYNELEKGDYVVHNVHGIGRYLGIETIEISGIHRDYLTIQYQNADRISIPVDQ
IQLLSKYVASDGKAPKINKLNDGRFQKTKQRVQHQVEDIAEDLIKLYAERSQLKGFAFSS
DDSYQQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRLLVGDVGFGKTEVAMRAAFKA
VNDHKQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSRFKSKSEQKTILEKLKKGQVD
IIIGTHRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHM
SMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLREMNRGGQVYYLYNKVDTMEQK
VSELKELIPEASIGYVHGQMSEILLENTLLDFINGEYDLLVTTTIIETGVDIPNVNTLFI
ENADYMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKALTEISEKRLETIKGFTELGSGFKI
AMRDLSIRGAGNILGSSQSGFIDSVGFEMYSQLLEEAIAKKQGKEKRRQKGNAEINLQID
AYLPSDYIVDERQKIEIYKRIREIDSRVNYEELQNELMDRFGEYPDVVAFLLEIGLVKSY
LDQVFVQLVEKKQQSVIVRFEKVSQQFFLTQDYFEALSVTNLKARISENKGLIEVIFDVK
NKKDYEILEGLLQFSEKLVEIKNQKKDC
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaagatggatattattgaattatttaatcaaaataaacagatatctgattgg
caaagaaatctaaataaatcaactcggcagctattaatgggtttgtcatcttcaactaag
tctattacaatggcctcttgtgtagaggaaaatcacaaaattttgattttaacgtctact
tatagtgaagcagaaagactttctagtgatctgattgacctggtgggagaagagagggtc
tatacatttcttgcagatgatactccgttagctgagtttgtcttttcttctcaagaaaag
attttttctcgtttggaagctctagattttttattagattctaaacaatcaggatttttg
atagttaatgtggcagctagtcaactatttttatccaatcctgttaatttcaattcagct
tatattaatttaaaaatagggcaagaatatgagttgaaagatttgatttctcaattgtta
aattcaggatataagcaagtatcacaagtattgaaacaaggggagtttagtattcgtggt
gatattttagatatttttgagcgctctagtcaaatgccttttcgggttgaattttttggt
gatgaagttgatggtattcgtctatttaatcctgaaaatcaaatttctattcaaaatgta
gaacatgtgtgtgttcatcctgctacagatatcatatttactaaagcagattataaaagt
gcacagaaaaaaatagaaaatcttatagaaaaaactgtagattcaacttcaaaatcttat
ttagaggagattttagctagtacaaaagaacaaattcaacatgctgatattagaaaatta
ttgtcttatttttatcaaaatgaatggacaattcttgattatcttccaaaacatagccca
attttctttgatgattttcaaaaaattatgaatagacatgctcagtttcaattagaagca
gcaaatttattgacagaagatttacaaaatagtaaaactgttggaaatcaatcttatttt
gcagatacatattcaatatttagaaagtataaacctgctaccttattttcaaattttcat
aagggactgggaaatttgaaatttgattctctttatcagttcaatcagtatcctatgcag
gaattttttagtcaatttcagcttttgaaagaagagattagtcgatataaaaaatctaac
tacacggtcattatacaatcaaattctttattgactttacaaagtttacataaaagttta
caagaatatgaaattccacttgattatgttaacgatactaaaattcataaacatgctgtt
caattagtagaaggacgtttaattcaaggatttaattttgtagacgaaaaaattgtttta
atcactgaatatgatattctgcaaaaaaaagtaaaacgaaaagttcgcaggcaaattatt
tctaatgctgaacgtttgaaaaattataatgagctggaaaaaggagattatgttgttcat
aacgttcatggaattgggcgatatttaggaattgagacgattgaaatttcaggaattcat
cgtgattatctcactattcaatatcaaaatgcagatcgtatttctattcctgttgatcag
attcagcttctttctaaatatgttgcgagtgatggtaaagcacctaaaatcaataaatta
aacgatggacgttttcaaaaaactaaacagagagtacaacatcaagtcgaagacattgct
gaggatttaatcaaactttacgcagagagaagtcaattaaaggggtttgctttttctagt
gatgattcttaccagcaagaatttgataatgattttccttacgtagaaacagaagatcag
ctgcgttctataaaagaagttaaaaaagacatggaaagtgatcatcctatggatcgtctt
ttagttggggacgttggttttgggaagacggaagtagctatgagagctgcttttaaagca
gtaaatgatcataaacaagtggcaattttagttccaactactgttttagctcaacagcat
tatacgaattttaaggaacgtttcaatgattttcctatcaatattgaagtattaagtcgt
tttaaaagtaaatcagaacaaaaaacaattttagaaaaactaaaaaaagggcaggtggat
attattattggaacgcatcgtctcctgtcaaaagatattgtatttgctgatttaggactc
attgttattgatgaggaacaacgttttggagttaagcataaagaaaaattaaaagagttg
aaaacaaaagttgatgttttaactttgacagcgactcctattcctcgtacactccatatg
tctatgttaggaatacgtgatttatcagttattgaaactcctccaacaaatcgctaccca
gttcaaacttatgttttagaaaataatgcaacagttattcgagatgcagttttaagagaa
atgaatagaggagggcaggtttactatctttacaataaagttgacacaatggagcaaaaa
gtttcagaattgaaagaattgattccagaagcttctattggatatgtgcatggtcaaatg
agtgaaattcttcttgaaaatactttacttgattttatcaatggggaatatgatcttttg
gtcacaacgactattattgaaactggtgttgatattcctaatgttaatactctttttatt
gaaaatgcagattatatgggattgtcaactttatatcaattacgagggcgtgttggtcgt
agtaatcgtattgcttatgcctatctcatgtatcgtcctgacaaggctttgacagaaatt
tctgaaaaacgtttggaaactataaaaggatttacagaattaggctctggttttaaaatt
gctatgcgagatttatctattcgtggtgctggaaatattttaggaagttcacaatctggt
tttattgattctgttggatttgagatgtattctcaattattagaagaggctattgctaaa
aaacaaggcaaagaaaaaagacggcaaaaaggaaatgctgaaattaatttgcagattgat
gcctatcttcctagtgattatattgttgatgaaaggcaaaaaattgaaatttacaaacgt
attcgcgagattgacagtcgtgtaaattatgaagaattacagaatgagttgatggatcgt
tttggagaatatccagatgttgttgcctttttattagaaattggtcttgtaaagtcttat
ttagatcaagtttttgttcagctcgttgaaaaaaagcaacaatctgtgattgttcgattt
gaaaaagtttctcaacagtttttcttaactcaagattattttgaagctctttctgtgaca
aatttaaaagcaagaatttcagaaaataagggattgattgaagttatatttgatgtaaaa
aataaaaaagattatgaaattttagaaggacttctgcagttttcagaaaagttagtagaa
attaaaaatcaaaagaaagattgctaa
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integrated database retrieval system
