KEGG   Sinocyclocheilus anshuiensis: 107654848
Entry
107654848         CDS       T04917                                 
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog isoform X1
  KO
K26109  nuclear exosome regulator NRDE2
Organism
sanh  Sinocyclocheilus anshuiensis
Brite
KEGG Orthology (KO) [BR:sanh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sanh03019]
    107654848 (nrde2)
Messenger RNA biogenesis [BR:sanh03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107654848 (nrde2)
SSDB
Motif
Pfam: NRDE-2 HAT_PRP39_N HAT_Syf1_CNRKL1_N TPR_14 Suf TPR_16 TPR_12
Other DBs
NCBI-GeneID: 107654848
NCBI-ProteinID: XP_016297609
LinkDB
Position
Unknown
AA seq 1157 aa
MALFPSCAELSGNNSSTGDRAPADLEWLSNQSFSKQDALKTHQRATERVQAEAEEPAGTR
EQKCKEREDSHGRSNKRKKEKKKKQKKKKSRDNSESGGSESDTVYPSDLLKKENADREEA
QVRVSETFMWLDDLQTPSDSPFCIDRRADRANWEYKSLYRGDIARYKRKGGSCLGLDFRM
QAVNWNDGGPEKKRVDKKPERYFCPSTRQLLRSDSLPALPVLSEGIAVSSDSYIKLSACT
VEQGSSTQAPVSWVNPLGIYDRGTSLWLEGKGQPEVKGDQQDVEAQRSSSTLLSARVEEF
NRKLRENPTDTQLWLDFIHFQDELAFGSGSFSAASDTDNDGDMKKMSLRAVLEKKLSIVD
RAVESNPANVDLKLEKLHLCKELWEPATLQKEWKKLVFIHPNSAPLWRKYLLFTQSLFST
FSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKAVC
LFQALLDFTFFKPDSVKDLPTRQQVDFFEPFWDSGEPRVGERGARGWKAWMLQQERGGWV
IPSEPGDDDDEEEQDDSEIKDKTWPKWKIWLDVEASREANHWLPWRPDKTKGQSEEDCED
PDRQVLFDDIGPSMIRVDRPDLQLQLILSFLQFLGLPGPSGKFSTTSSSNILLDNLTFLE
EGPDPERPLTSYDLPMAGICAVGHMTFLSDCRRQAGLCKAGEEFLQNVLQQTLQLISAQD
QAAITLCWLQYEKLKVLRCLRSGNKRQLKSQGKRSKRLVKRLLKEPDNRSSLALWREYAH
LEWLLGNLEEARKVFDTALGMGVTRGLNDPVLCNLCFLYAQLEVEQALNSGTVPTSKAVY
ILTKLAEGAAYTPFSGQINPVTILKARKAYEQALLSFLPEQSTGSNARAPKKLHRMSSLV
GCFGLFQYLTMGIDAADAVYNQAIQKLISWNLNSEVTDGSLRRPKVFADWESVAVQHVSL
LRHHANTSVFPLSRLRLALTDALSLLPSSASLWQLYLQTENRYHSAGRARRFFHSVAKKT
DSVVPYLFAITAEQRLKQMLDSVQRSRLPREALPTLPNNGLSNRIRCLFENATATEHGAH
CPLLWRMYLNFMVCDGNAERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEFLDLMTEK
ELRLRVPMEEVDILLED
NT seq 3474 nt   +upstreamnt  +downstreamnt
atggctcttttcccgtcctgcgctgaactgtcaggcaataacagctctactggggataga
gctccagcagatctggaatggctgagtaatcagagcttcagcaaacaagatgctttgaag
actcatcagcgggccacagagagagtgcaagcagaggcagaagaaccagcaggcacaaga
gagcagaagtgtaaagagagagaagatagccatggcagatcgaataagagaaagaaagaa
aagaagaaaaaacagaagaagaagaagagcagagataactcggagagcggtggatctgaa
tcagacacagtttaccccagcgacctgctaaaaaaggagaacgctgacagagaggaagct
caagttcgggtgagcgagacctttatgtggctggatgacctccagaccccctctgactcc
cccttctgtattgacagaagagctgaccgtgccaactgggaatacaaatccctctatagg
ggagacatagccaggtataagaggaagggaggctcttgcctggggttagacttcaggatg
caggctgtgaactggaatgatggaggtccagagaagaagcgagtggacaagaaacccgag
cgctatttctgtccttccacccgtcagttgctccggtcagatagtctgcctgctttgcct
gtactctctgagggcattgctgtcagctctgattcctacatcaagctctcagcctgcact
gtagagcagggctcttccacccaggcacccgtatcatgggtaaatccgctgggcatctat
gaccgtggaacctctttatggctggagggcaagggtcaaccggaggtcaagggagatcag
caggatgttgaggctcaaaggagcagcagcacccttctgagtgcacgggtggaagagttt
aacaggaagctacgggagaatcctacggacacccagctgtggctggactttatacacttc
caggatgaactggcctttggttctgggtcattctctgctgccagtgacactgacaatgat
ggtgacatgaagaagatgtctcttcgtgccgtgctggagaagaagctgtccattgtggac
agggcagtggaaagtaaccctgccaacgtagacctgaaactggagaaactccacctgtgc
aaggaactatgggagcctgccaccctgcagaaagagtggaagaaactagtgttcatccat
ccaaacagcgcccctttatggaggaagtatcttctcttcacacagagtcttttcagcact
ttctcagtgtcaaaggtcaacagcgtgttcggaaagtgtttaagcacgctcagtgcagtc
caagatggcagcatggtgtctcaccctccacttccaggcacccaggaagacctcttagat
atctttctacagcagtgccatttcctgcggcaggcgggtcacacagagaaagctgtgtgt
ctcttccaagcccttctggacttcactttcttcaagccagacagcgtgaaagacctgccc
actagacaacaggtggatttttttgagcctttttgggacagtggagagcccagggttggg
gaacggggggctcggggatggaaggcttggatgcttcagcaggagagaggaggatgggtg
attccatctgagccaggtgatgatgatgatgaagaagagcaggatgactccgagatcaaa
gacaagacctggcctaagtggaagatctggttggatgtggaggcgtcccgagaggcaaac
cactggttgccatggagaccagataaaaccaagggccaatcagaagaggactgtgaggac
cccgacaggcaggtcttgtttgatgatattggcccatctatgattcgtgtggacagacca
gatcttcagctacagttgatcctgtccttcctgcagttcctaggtctgcctggaccttca
gggaagttctctacaacatcttcctcaaacattctactggacaatctaaccttccttgag
gagggcccagacccggagcgaccattgacctcttatgacctcccgatggctgggatctgt
gcagtgggtcacatgacatttctgagtgactgcaggaggcaggcagggctgtgtaaggca
ggggaggagtttctccagaacgttctacagcaaactctccaactcatctccgcacaggat
caagctgctattactctctgctggctgcagtatgagaaactaaaggtactgagatgttta
cgcagtggaaataaaaggcaactgaagtctcaggggaagcgtagtaaacggctagtgaaa
cgactgctaaaagagccagataacaggagcagcctggcactctggagagagtatgcccat
ctggagtggcttctgggtaatctggaagaggcacgcaaagtatttgacactgccttgggc
atgggcgtgactagaggtcttaatgatcctgttctctgtaatctctgttttctctatgcc
cagttagaggtagagcaggccttaaacagtgggacagtccccacttccaaagctgtctac
attctcactaaattagctgagggtgctgcctacactcctttctctggccaaatcaaccca
gtgaccatactgaaggccagaaaggcctatgagcaggccctattgagctttttacctgag
cagagcacaggcagcaatgctagagctccaaagaaactccacagaatgtccagcctggtt
ggatgttttgggctttttcagtacctcacaatggggatagatgcagctgatgctgtgtac
aatcaggccatccaaaaactgatttcctggaacttgaattcagaagtgacagatggatct
ctgaggagacccaaggtctttgcagactgggagtctgttgctgtccagcatgtatcactg
ctgcgccaccacgccaacaccagtgtgtttcctctctcccggctaagactggcacttaca
gatgccctctccttactgccctccagtgcctcattatggcaactctaccttcaaacagag
aaccgctatcacagcgcaggccgtgcccgcaggtttttccacagtgtggcaaagaaaact
gacagtgttgtgccatatctttttgccattactgcagagcaacgactcaaacagatgctg
gactctgttcagaggtctcgtcttcctagagaagccctgcccaccctgccaaataatggt
cttagcaaccgtatccgctgtctgtttgaaaatgctacggcaacagaacatggggcccat
tgtcctctgctgtggagaatgtatctgaacttcatggtatgtgatgggaatgcagagagg
ggcagtggaatcttctacaaggccctacaggcagtgccctgggtaaagggcttgtacatg
gacgcagtgcagctgtttcctgaacgtgtgcaagagtttttagaccttatgactgagaaa
gagttgcgtctgagagtgcccatggaggaggtggacatcttgctggaggactag

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