Sinocyclocheilus anshuiensis: 107660376
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Entry
107660376 CDS
T04917
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03013
Nucleocytoplasmic transport
sanh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107660376
03015 mRNA surveillance pathway
107660376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107660376
Enzymes [BR:
sanh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107660376
5.6.2.5 RNA 5'-3' helicase
107660376
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107660376
mRNA cycle factors
Common to processing body (P body) and stress granule
107660376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107660376
NCBI-ProteinID:
XP_016305130
UniProt:
A0A671RBZ3
LinkDB
All DBs
Position
Unknown
AA seq
1094 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVMLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSGTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGSRGGRQRNRGSGQPNMPSSQASQD
LVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQDSTYQG
ERAYQHGVTGLSQY
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaacgcagggccagacccagagccaactcgacaaccaggtgaacggg
cctgatggcgttctgcccaacggagaggatgcagtggtgaagaccagccaacttctggcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagacctgccggtgcac
gcctgcagctactgtggtatccatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgatgctgcataaggacggaccgctgggagagacggttctg
gagtgctataactgtggctgccgtaatgtcttcctgctcggcttcatcccggctaaagca
gactctgttgtggtgcttctctgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctagtgaagatcccgtccgagcaggagcaactgagggcccgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctacgctacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggccgactatgacaagaaactcaaa
gagtcccaaactcaagacaatattacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacatggctccgctgtggaaaggaatcggacacgtc
atcaaagtcccagacaattatggagatgaaattgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccgcataacttccaggtggactttgtctggaagtcgacatctttt
gaccgaatgcagagcgccttgaagacgtttgccgtggacgagacctctgtgtccggctac
atctaccacaagcttctgggtcatgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcacagggcctgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgctgcagcgacccctcagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaatggtccggtgctggtttgt
gctccgagtaatatcgcagtggatcagctgacagagaagatccatcagacagggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatagattcccctgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgttaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgcgtgggtgcg
ggtgaccctcgcctggctaaaatgcagtttcgctccatccttattgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgctttcccttcaaatatcttctacgagggctct
ctgcagaacggcgtcaccgctgctgatcgcatcaagaaaggctttgactttcagtggcct
cagcccgataagcccatgtttttctacgtaacccagggccaggaggagattgcgagttct
ggcacctcctatctcaacaggactgaggctgctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagatcggcataattacaccatatgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgacccacgtcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagcctctgtggaaccacctgctgaactactataaggagcagaaggttctggtggag
ggaccgctgaacaacctgagggagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtactgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcggcactgggcgtccatctaatatgtacttc
cagactcatgaccaggtcggcatgatcgggactgggccgaacccaatgggctccatgaac
atccccatcccgttcaatctggtcatgccgcccatgcctccgcctgggtacctgggccag
gtgaacggacctgctgccggtcgtggtgctcctaaaggtaagaccgggagtcgcggaggt
cgtcagaggaaccgtggcagcgggcagcccaacatgccaagcagccaggccagtcaggac
ctggtgtcccagcccttctctcagggtccactgacccagggctacatcaccatgagccag
ccttcacagatgagccagcctggactgtcccagcctgagctctcacaggatagctacctg
ggtgatgagttcaaatcccagatggatgttgcactttcccaggattccacctaccagggc
gaacgggcatatcagcacggagtgactggactctcacagtactag
DBGET
integrated database retrieval system
