Sinocyclocheilus anshuiensis: 107662217
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Entry
107662217 CDS
T04917
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sanh
Sinocyclocheilus anshuiensis
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sanh03016
]
107662217
Enzymes [BR:
sanh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107662217
Transfer RNA biogenesis [BR:
sanh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107662217
Prokaryotic type
tRNA splicing ligases
107662217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
107662217
NCBI-ProteinID:
XP_016307639
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGEV
TAHTVFLVDNLCKQQCIFGKRIGIDKIHTIPNPINDVAAXRFVSSAGGVGFDINCAVRLL
RTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWA
EDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMG
IDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARIMSPEGQDYL
KGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEEHMLDGKQ
KTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTC
HGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHD
AGISKKAIKLRPIAVIKG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagcttcagtatctagataaaatccacaaaaactgctgg
cggatcaagaagggcttcgtgccgaacatgcaggtggagggtgttttctatgtgaatgat
cctctggagaaactcatgtttgaggagctgagaaacgcctgtcgtggtggaggtgaagtt
acagcacacacggtttttttagtggacaatttgtgcaaacaacaatgtatctttggaaaa
agaatcggaatcgataaaattcacacgatacccaaccctattaacgatgtggcggctnca
cggttcgtctcgtctgcaggtggcgtggggtttgacattaactgtgccgtccgtctgctg
aggactaacctggacgagggcgacgtgcagccggtgaaagagcagctggcgcagtccatg
tttgaccacattcccgtcggagtcggatccaagggcgtcattcccatgggagcaaaagat
ctggaggaagctctggagatgggtgtggactggtctctgagggaaggatacgcctgggct
gaggataaagagcactgtgaggaatacggccggatgctgcaagccgatcccaacaaagtc
tcgtccaaagccaagaagagaggactgccacagttggggacgctgggtgcaggaaaccac
tacgccgagattcaggtggtggatgagatctataacgattacgctgcgaagaagatgggc
atcgaccacaaggggcagatctgtgtgatgatccacagcggcagtcgaggcctcggccac
caggtggcgacagatgctttggttgcgatggagaaggcgatgaagcgggataagatcacg
gtgaacgaccgtcagctggcctgcgctcgcatcatgtctcctgagggtcaggactatctg
aagggcatggcggccgccggcaactacgcctgggtcaaccgctcctccatgaccttcctc
actcgacaggccttctccaaagtcttcaacaccacaccagacgatctggacatgcacgtc
atctacgacgtctcgcacaacatcgccaaggtggaagagcacatgctggatggcaaacag
aagacgcttctcctgcacaggaagggctcgacgcgagcgttcccgcctcaccatccactc
atacctgtcgactatcagctgacaggccagccggttctgatcggaggaaccatgggcacc
tgcagttacgtgttgacgggcacagagcagggcatgacggagacgtttggcaccacgtgt
cacggagcgggtcgagctctatccagagccaaatccagacgcaacttggacttccaggac
gttctggataaactggcagacatgggcatcgccatcagagtggcatcacccaagctggtg
atggaggaggctcctgaatcctacaagaacgtcacagatgtagtgaacacgtgccacgac
gccggcatcagtaagaaggccatcaagctcagacccatcgctgtgattaaaggctga
DBGET
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