Sinocyclocheilus anshuiensis: 107667754
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Entry
107667754 CDS
T04917
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh04510
Focal adhesion
sanh04512
ECM-receptor interaction
sanh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107667754
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107667754
09142 Cell motility
04820 Cytoskeleton in muscle cells
107667754
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sanh00536
]
107667754
Glycosaminoglycan binding proteins [BR:
sanh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107667754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
107667754
NCBI-ProteinID:
XP_016314956
LinkDB
All DBs
Position
Unknown
AA seq
1448 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLARGQGEDDRTGGSCTLDGQVYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCLNPVIPHDECCPVCPDDEFQEPSAEGPRGPAGEKGDRGPPGPSGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGAMAVPGPMGAMGPRGPPGPPGT
SGPQGFTGHPGEPGEAGAPGPMGPRGSAGPPGKNGEDGESGKPGRPGERGPSGAQGARGF
PGTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEPGASGENGTPGAMGPRGLPGERGRSGP
PGAAGARGNDGAAGAAGPPGPTGPAGSPGFPGGPGAKGEVGAQGSRGAEGPQGTRGEPGN
PGPAGAAGPAGNNGADGAHGLKGAPGASGIAGAPGFPGPRGPPGAAGAAGAPGPKGNTGE
VGTPGSKGEAGAKGEAGAQGVQGPPGPPGEEGKRGARGEPGSAGTRGPPGERGAPGGRGF
PGADGSAGPKGATGERGGPGAVGPKGATGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGT
PGASGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGALGATGAPGKDGD
VGAPGAPGTAGPAGERGEQGPAGPPGFQGLPGPQGSTGEPGKSGEQGLPGEAGALGPVGS
RGDRGFPGERGAPGPAGPAGARGSPGSAGNDGAKGDAGSPGASGAQGPPGLQGMPGDRGA
AGLPGLKGDRGDQGAKGADGALGKDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPNGA
RGPPGERGETGSSGPAGFAGPPGADGLPGAKGEPGDTGAKGDAGLPGPAGATGTPGPQGP
VGSTGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPPGPSGVPGKEGQKGNRGETGP
SGRTGEVGAAGPPGAPGEKGAPGAEGPSGSSGIPGPQGIAGQRGIVGLPGQRGERGFPGL
SGPSGEPGKQGPSGPSGERGPSGPMGPPGLAGPPGEPGREGTPGNEGSAGRDGAAGPKGD
RGETGAAGTPGAPGPPGASGPLGPAGKTGDRGESGPAGPAGPAGPSGPRGPAGPAGARGD
RGETGEAGERGMKGHRGFTGMQGPPGPPGPSGEPGPAGASGTGGPRGPAGSSGAAGKDGM
SGLPGPIGPPGPRGRTGEIGPAGPPGPPGLAGPPGPSGGGFDIGFIAQPQEKAPDPFRSY
RADDANVMRDRDLEVDTTLKSLSQQIESIISPDGTKKNPARTCRDLKMCHPDWKSGEYWI
DPDQGCNQDAIKVYCNMETGETCVYPTESSIPKKNWYTSKNIKEKKHVWFGEAMTDGFQF
EYGSGDSKPEDVNIQLTFLRLMSTEATQNITYHCKNSIAYMDQASGNLKKALLLQGSNEI
EIRAEGNSRFTYSVTEDGCTSHTSAWGKTVIDYKTMKTSRLPIIDIAPMDVGAPNQEFGI
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttggcgctgttgctcagcgcagcggtgcttttggca
agaggacaaggcgaggatgatcgcacaggtggcagctgcacattggacggccaggtctac
aatgacagggacgtctggaaaccagagccatgccaaatctgcgtgtgcgacagcggcacc
gttatgtgcgacgaggtgatctgcgaggacacgaccgactgcctcaacccagtgattccc
cacgacgagtgctgccccgtctgcccagacgacgaattccaggagcccagtgctgaggga
ccaagaggtcctgccggtgagaagggtgacaggggtcctcctggtccttccggcaatgac
ggaatacctggacagcctggccttcctgggcccccaggcccccctggacctcctggcctt
ggtggaaacttttctcctcagatgtctggtggatttgatgagaaatccggaggagcaatg
gctgtcccaggccccatgggagctatgggcccacgtggaccccctggacctcctggaact
tctggaccccaaggatttactggccaccctggtgagcctggtgaggctggtgctcctggt
ccaatgggtccccgtggttcagctggtccccctggaaagaacggagaggatggtgagtct
ggcaaacccggtcgccctggtgagcgcggaccttctggcgcacagggtgctcgtggattc
cccggaaccccaggacttccaggcatcaagggacacagaggattcagcggtctagatgga
gctaagggagactctggccctgctggacctaagggtgagcctggtgcctctggtgagaac
ggaactcctggagctatgggtcctcgtggtctgcctggcgagagaggccgctctggtcct
cctggtgctgctggtgctcgtggtaacgatggtgccgctggagctgctggtcctcctggc
ccaactggccctgctggttctccaggattccctggtggccctggagctaagggagaggtt
ggtgctcagggatctcgtggtgcagagggaccgcagggaacccgtggtgagcctggtaac
cctggacctgctggtgctgctggacccgctggtaacaatggagctgatggtgcccatggt
cttaaaggtgctcctggtgcttctggtattgctggtgctccaggtttccctggacctcgt
ggtcctcctggagctgctggagctgctggtgcccctggccctaagggtaacactggtgag
gttggcacccctggttccaaaggagaggctggtgctaagggagaggctggtgcccaagga
gttcagggtccccctggcccccctggtgaggaaggcaagagaggagctcgtggtgagccc
ggttctgccggtacccgcggaccccctggtgaacgtggtgctcctggtggtcgtggtttc
cctggtgctgatggatctgcaggtcctaagggtgccactggtgagcgtggaggccctgga
gctgttggacctaagggtgccactggtgagcctggccgcaatggtgaacctggtatgcca
ggatccaagggtatgactggtagccctggcagccctggacctgatggaaagaccggaact
cctggtgcttctggacaagatggccgccctggaccacctggccccgttggagccagagga
cagcctggtgtcatgggattccctggacctaagggtgctgctggtgaggctggcaaacct
ggtgagagaggtgtgatgggtgctcttggtgccactggcgctcccggtaaagatggtgat
gttggtgcccctggtgctcctggaactgctgggcctgctggtgagagaggtgaacaggga
cctgctggtcctcctggattccagggtctgccaggacctcagggttcaactggtgagcct
ggcaagtctggtgagcagggtcttcctggagaggctggagctcttggacctgttggatcc
agaggtgacagaggattccctggtgagcgtggtgcccctggccctgctggtcctgctggt
gcccgtggttctcctggttcagctggtaatgatggggccaagggtgatgctggttcccca
ggtgcctctggtgctcagggtcctcccggacttcaaggaatgcctggcgaccgtggtgct
gctggtctgccaggtcttaagggtgacagaggtgaccaaggtgccaagggtgctgatggt
gcccttggtaaagatggcatccgtggtatgaccggaccaattggacctcctggacctgct
ggagctcctggtgacaagggagagactggtgctcctggacttgttggacctaatggtgcc
cgaggaccacctggtgagcgtggagagactggttcttctggacccgctggatttgctgga
cctcctggtgccgatggtctgcctggtgctaagggagagcctggagacactggcgctaag
ggtgacgctggtcttccaggacctgcaggagcaactggtacccccggacctcagggtcct
gttggttctactggacccaagggtgcccgtggtgctgctggtcctcctggtgctactggt
ttccctggtgctgctggcagagttggtccccctggccctgctggaaatgctggaccccca
ggaccttctggagtccctggtaaggagggccagaaaggtaaccgtggtgagactggacct
tctgggcgcactggtgaagttggtgctgctggaccacctggtgcccctggtgagaaagga
gctcctggagccgagggtccttctggctcttctggtatccctggacctcaaggtattgct
ggtcagcgtggtattgttggtctccctggacaaagaggcgagcgtggtttccctggtctc
tccggcccatctggagagcctggcaaacaaggaccttctggtccctctggtgaacgtgga
ccttctggacccatgggaccccctggattggctggacctcctggtgagcctggtcgtgag
ggaactccaggtaatgagggttctgctggacgtgatggtgctgctggccccaagggtgac
cgtggtgagactggcgctgctggcactcccggtgctcctggacctcctggtgcttctgga
ccccttggccctgctggaaagactggtgatcgtggagagtctggccctgctggtcctgcc
ggtcctgctggcccttctggtccccgtggacccgcaggacccgctggagctcgtggagac
aggggtgagactggtgaggctggcgagagaggcatgaagggacacagaggatttaccgga
atgcagggacccccaggacctcctggaccctctggagaacctggacctgctggagcttct
ggaaccggtggacctagaggcccagctggatcttctggagccgctggtaaggatggtatg
agcggacttcctggacccattggacctcctggaccccgtggtcgcactggagaaattgga
ccagctggacctcctggacctcccggactcgctggacctcctggaccctctgggggtgga
tttgatatcggcttcattgcccagccacaggagaaggcccctgatcccttccgttcctac
cgtgccgatgatgccaatgtgatgcgcgaccgtgacctcgaggttgacaccaccctcaag
tccctgagccaacagattgagagcatcatcagcccagatggcaccaagaagaatcctgcg
cgcacttgccgtgacctgaagatgtgccacccggactggaagagtggcgagtactggatt
gaccctgaccagggctgcaaccaggatgccatcaaggtctactgcaacatggaaactggc
gagacctgcgtctacccaactgagtcctccattcccaagaagaactggtacacaagcaag
aacatcaaggagaagaagcacgtctggtttggagaggccatgaccgatggcttccagttc
gagtatggcagcggggactctaagcctgaggatgttaacattcagctcaccttcctgcgc
ctcatgtccactgaggccacccagaatatcacataccactgcaagaacagcattgcatac
atggaccaggcttctggcaacctgaagaaggctcttctgctgcagggctccaacgagatc
gagatcagagcagagggcaacagccgcttcacatacagtgtcactgaggatggttgcacg
tcgcacaccagtgcatggggcaagacagtcattgactacaaaacaatgaaaacatcccgt
ctgcctattattgacatcgcccctatggacgttggtgcacctaatcaggaatttggcatt
gaagttggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
